PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001498.1_g020.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1125aa MW: 125969 Da PI: 7.9565

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001498.1_g020.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.5e-08	92	116	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ tC+y +C+FaH+ Pav_sc0001498.1_g020.1.mk 92 FKTKLCCKFRA-ATCPYVTNCNFAHS 116 69*******.***********8 PP
2	zf-CCCH	41.6	2.1e-13	222	247	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Pav_sc0001498.1_g020.1.mk 222 WKTRICNKWELTGYCPFGSKCHFAHG 247 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1125 aa Download sequence
MDYGRETNVV QVFTGSSVGG DIWPADQAVW ATEDEYRVWN NGDALADTMS NSNYDQRQSQ 60 SRSGSEPPNK KSRNSQDATS SNRSKAIGKM FFKTKLCCKF RAATCPYVTN CNFAHSIEEL 120 RRPPPNWQEI VAAHEEEKGV SSEPREEYQI PIVSTGYGVE TQRSYKGRHC KKFYTEEGCP 180 YGDNCTFLHD EQSKNRESVA ISLGPGGYGG AANGANNKPS NWKTRICNKW ELTGYCPFGS 240 KCHFAHGVAE LHRYGGGLVE GDARESSSAP PDNKQGGVPS KTPADTVVVS VPLVPHSDVY 300 HLGVPSQRSS IVIQRPGQRA HQKWKGPDKI SRIYASSHHH SCSSSLNIHA LRLAGSASRS 360 PATWFLIRYS CSILVMQGMS ASTTPDAAYP PSSQHASSPP ITVVLTVLLL VFFFVGFFSI 420 YFCKCFMDHI LTSFQRSPAG DLVGTAVVPK EGLDVSLIES FPTFVYASVK DYRIEKYGLE 480 CAICLVEFED DSMLRLLTAC CHVFHQECID LWLESHKTCP FCRGNLESMP SNLAEKSPVL 540 AHENVAMQEI HEGNEPVLLD PDAVHVDIKD EQGQDQHHQG TSTSDSWPPN KNKNINNMVA 600 EDEQSSRTNH DHQNVENETE RFSRSHSTGH SIVRPRAEED RYTLRLPEHV KIKLLRGHHN 660 WTGSCTTFGE FSRQTHNAAE RCQGKQMNRR FCGGDGRCSS QSRPIGMYKV RGPRDSGLWH 720 HAHEPSGSWV HVEPQSCRDI GGYVILILVR ASMLKIKGFL RDYFRRHGFT VEVLDNKVEE 780 FTRGILGPNI LIILRHSVGS NPVVDVTLKK NDDAVVGSKG RPAYMSTMAF DFLLIVLPIV 840 LVYTVLAEWM YIWATLLTLL LLIRIAANRF GSYSNLKEDP YSVRKNISSY RVATMIITCL 900 CILAVDFKIF PRRYAKTETY GTGWVHVAEY GVHWNFFFTL AAISILTCII NVPAQYSGIL 960 GSLILVGYWG LYLVGVQLGN FLFFNNHSSA TMRSTNWAKI RVWILSLLFW LLTVIIDRHV 1020 ERVSRRMCNL GYVTLVLAVN LQVLAILLLS DFLPGSKTSV LEEAYDRNLL GTFLLANLLT 1080 GLVNLFVDTL FASSVKALFI LIAYAFSLSF LIGLLDFCGI RLKFW

Sequence ? help Back to Top

Protein Sequence Length: 1125 aa Download sequence

MDYGRETNVV QVFTGSSVGG DIWPADQAVW ATEDEYRVWN NGDALADTMS NSNYDQRQSQ  60
SRSGSEPPNK KSRNSQDATS SNRSKAIGKM FFKTKLCCKF RAATCPYVTN CNFAHSIEEL  120
RRPPPNWQEI VAAHEEEKGV SSEPREEYQI PIVSTGYGVE TQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG AANGANNKPS NWKTRICNKW ELTGYCPFGS  240
KCHFAHGVAE LHRYGGGLVE GDARESSSAP PDNKQGGVPS KTPADTVVVS VPLVPHSDVY  300
HLGVPSQRSS IVIQRPGQRA HQKWKGPDKI SRIYASSHHH SCSSSLNIHA LRLAGSASRS  360
PATWFLIRYS CSILVMQGMS ASTTPDAAYP PSSQHASSPP ITVVLTVLLL VFFFVGFFSI  420
YFCKCFMDHI LTSFQRSPAG DLVGTAVVPK EGLDVSLIES FPTFVYASVK DYRIEKYGLE  480
CAICLVEFED DSMLRLLTAC CHVFHQECID LWLESHKTCP FCRGNLESMP SNLAEKSPVL  540
AHENVAMQEI HEGNEPVLLD PDAVHVDIKD EQGQDQHHQG TSTSDSWPPN KNKNINNMVA  600
EDEQSSRTNH DHQNVENETE RFSRSHSTGH SIVRPRAEED RYTLRLPEHV KIKLLRGHHN  660
WTGSCTTFGE FSRQTHNAAE RCQGKQMNRR FCGGDGRCSS QSRPIGMYKV RGPRDSGLWH  720
HAHEPSGSWV HVEPQSCRDI GGYVILILVR ASMLKIKGFL RDYFRRHGFT VEVLDNKVEE  780
FTRGILGPNI LIILRHSVGS NPVVDVTLKK NDDAVVGSKG RPAYMSTMAF DFLLIVLPIV  840
LVYTVLAEWM YIWATLLTLL LLIRIAANRF GSYSNLKEDP YSVRKNISSY RVATMIITCL  900
CILAVDFKIF PRRYAKTETY GTGWVHVAEY GVHWNFFFTL AAISILTCII NVPAQYSGIL  960
GSLILVGYWG LYLVGVQLGN FLFFNNHSSA TMRSTNWAKI RVWILSLLFW LLTVIIDRHV  1020
ERVSRRMCNL GYVTLVLAVN LQVLAILLLS DFLPGSKTSV LEEAYDRNLL GTFLLANLLT  1080
GLVNLFVDTL FASSVKALFI LIAYAFSLSF LIGLLDFCGI RLKFW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-111	C3H family protein