PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001498.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 314aa MW: 35018 Da PI: 8.5856

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001498.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.2e-14	116	167	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i+ A+e++k+L+ Pav_sc0001498.1_g010.1.mk 116 QRMTHIAVERNRRKQMNEHLAILRSLMPDS---YVQRGDQASIVGGAIEFVKELE 167 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MTMALEALTS NEPFNFIIYD TISATPYSFE DSSGTTSNFI PPDKYFCTST SSMKSDQDTQ 60 IKRALNLEAA AAGGGGRQKQ SSLGVNNNNA QQQQQGRKKR RRKPRVCKNK EEAETQRMTH 120 IAVERNRRKQ MNEHLAILRS LMPDSYVQRG DQASIVGGAI EFVKELEHLL HSLEAQKLQL 180 LHNADVSTST SKVVQTPFAQ LLECPQYTWS HCPNKFTSKT KAAIADIEVT LIETHANLKI 240 MSRRISPRQL SKLVGGIQSL QLTILHLTVT TMDPFVLYSI SVKIEEGCLL SSVDDIATAI 300 HHMLRVIEEA ATLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	103	RKKRRRK
2	97	104	RKKRRRKP
3	98	103	KKRRRK
4	117	128	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-70	bHLH family protein