PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001479.1_g120.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 165aa MW: 18788.6 Da PI: 7.8027 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00072 | 19 | 41 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s k + +H+ tH Pav_sc0001479.1_g120.1.mk 19 YYCEYCGICRSKKTLIASHMLTH 41 89********************6 PP | |||||||
2 | zf-C2H2 | 22.1 | 3.9e-07 | 63 | 84 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Pav_sc0001479.1_g120.1.mk 63 TCQECGATFKKPAYLKQHMQSH 84 6*******************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence |
MGIGEAEEEG PIFRDIRQYY CEYCGICRSK KTLIASHMLT HHKEEMEMAK EADGKGEREK 60 SNTCQECGAT FKKPAYLKQH MQSHSLELDS VEAFCSEPGC MKYFSNQKCL KAHIQSCHQH 120 ITCEICGTKK LKRNIERHLC MHEGGGASVE RIKCSYKGCL HTFST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 9e-37 | C2H2 family protein |