PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001405.1_g210.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 1006aa MW: 112996 Da PI: 7.6987

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001405.1_g210.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.6	1.5e-08	244	302	22	81
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++ + e++ +y Pav_sc0001405.1_g210.1.mk 244 TRSKTRADKDREVAEFLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQV-GKSY 302 56788889999*************************************9755444.3445 PP

Sequence ? help Back to Top
Protein Sequence Length: 1006 aa Download sequence
MGDNKGDTSK KQPQQQQTQQ QQQQQISPSP NDPLEDQLLP TEITRPRHHQ PQPPPAAATF 60 NIPAPLFVPS GAATSSSSPF DQQHFEAAVN PKRPRYTTGQ WKLLPSPSSQ TKQTQIPMLA 120 KESTSSPNPK STQLPQPHVT PTGAASSSDT ASSPPAHSPL PSLSATSGQD TNKTEGDLQN 180 PVHNHQFRKG KYVSPVWKPN EMLWLARGWR IQYQGGPAGG SSDHGSGSSS RTEQIPTETG 240 TPHTRSKTRA DKDREVAEFL QKHGVNRDAK TAGTKWDNML GEFRKVYEWE RGAEREQVGK 300 SYFRLSPYER KLHRLPASFD EEVFEELSQF MGSRMRTPQS RLGSVGDDSR SAFVVTRSLT 360 QPPSFKEDEF PLSGSKKQVM IMSGGGEPFY HGGRGTLLGF HHHDQSSLDF TAGLSSSSAS 420 KELRRIGKIR MTWEESVSLW AEEGEHHRGR VRLQGSSFLN ADELTFFDDS MVACTMEAFE 480 DGPLRGFSVD RFVSGQQVKV FGRRKPSSST SGFNEKVQLS LPESSSRSIP STEFQDPTEY 540 YVGCLGASPP SLPSLPELQW YLQEPPPEEL RFPLRKDVYR DLPQGKEIFF TTSTELLDCR 600 AITCDILSPI IRTNPSLSAS TATSRDSFIP IWDDCINRLV SKFCSLEMVF IRRPNTSSPT 660 EPLQDQWPNV TGFVRNFCLW RGEETDQLRD SHDMNPSSSI VEKILWTYMD LPYIFGYYAI 720 GYVVTFCALS RSQDRINRTD LATIDLSSPS ERLKALVPCY RIAGLLPLLA DRCFNNTNCN 780 KLLPHSDFER LDSGNGRNMV EMTPTTVTRF FSNVRKWTAV KEIYDFLDHR IPHAEFIHRS 840 LEKDLGLVFK PRGCKCKPTN CEQLVEALKY VTKALVALHD LSFMHRDISW EKVMRRTERE 900 NEWFVCGFEE AVGAPQIYPR RAVAAGESGA RVRHAPEMER GLHGVKVDVW GVGYLVRSCG 960 LTGLPKMLRE LQNRCLDQNP EQRPTAADCY HHLLQLQSAT AGGALM

Sequence ? help Back to Top

Protein Sequence Length: 1006 aa Download sequence

MGDNKGDTSK KQPQQQQTQQ QQQQQISPSP NDPLEDQLLP TEITRPRHHQ PQPPPAAATF  60
NIPAPLFVPS GAATSSSSPF DQQHFEAAVN PKRPRYTTGQ WKLLPSPSSQ TKQTQIPMLA  120
KESTSSPNPK STQLPQPHVT PTGAASSSDT ASSPPAHSPL PSLSATSGQD TNKTEGDLQN  180
PVHNHQFRKG KYVSPVWKPN EMLWLARGWR IQYQGGPAGG SSDHGSGSSS RTEQIPTETG  240
TPHTRSKTRA DKDREVAEFL QKHGVNRDAK TAGTKWDNML GEFRKVYEWE RGAEREQVGK  300
SYFRLSPYER KLHRLPASFD EEVFEELSQF MGSRMRTPQS RLGSVGDDSR SAFVVTRSLT  360
QPPSFKEDEF PLSGSKKQVM IMSGGGEPFY HGGRGTLLGF HHHDQSSLDF TAGLSSSSAS  420
KELRRIGKIR MTWEESVSLW AEEGEHHRGR VRLQGSSFLN ADELTFFDDS MVACTMEAFE  480
DGPLRGFSVD RFVSGQQVKV FGRRKPSSST SGFNEKVQLS LPESSSRSIP STEFQDPTEY  540
YVGCLGASPP SLPSLPELQW YLQEPPPEEL RFPLRKDVYR DLPQGKEIFF TTSTELLDCR  600
AITCDILSPI IRTNPSLSAS TATSRDSFIP IWDDCINRLV SKFCSLEMVF IRRPNTSSPT  660
EPLQDQWPNV TGFVRNFCLW RGEETDQLRD SHDMNPSSSI VEKILWTYMD LPYIFGYYAI  720
GYVVTFCALS RSQDRINRTD LATIDLSSPS ERLKALVPCY RIAGLLPLLA DRCFNNTNCN  780
KLLPHSDFER LDSGNGRNMV EMTPTTVTRF FSNVRKWTAV KEIYDFLDHR IPHAEFIHRS  840
LEKDLGLVFK PRGCKCKPTN CEQLVEALKY VTKALVALHD LSFMHRDISW EKVMRRTERE  900
NEWFVCGFEE AVGAPQIYPR RAVAAGESGA RVRHAPEMER GLHGVKVDVW GVGYLVRSCG  960
LTGLPKMLRE LQNRCLDQNP EQRPTAADCY HHLLQLQSAT AGGALM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-08	Trihelix family protein