PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001405.1_g200.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 602aa MW: 67775 Da PI: 6.8281

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001405.1_g200.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	6.8e-13	39	91	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h e+E++RR+++ ++ Lr++lP ++K s ae +Av+YIk+Lq Pav_sc0001405.1_g200.1.mk 39 KKMMHREIEKKRRQEMAALYASLRSVLPLeY---IKGKRSLAEHMNEAVNYIKHLQ 91 6899***********************77...*******************9 PP
2	HLH	19.4	2e-06	272	318	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+ + + Lr+llP+ + ++K s +e ++v+YI ++ Pav_sc0001405.1_g200.1.mk 272 RDNERQRRQLMAVLNASLRSLLPHeL---IKGKRSISEHMNETVNYITQM 318 679*******************88...****************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MDVGMFNTIN TGGQQGKSSL ALTLDSAENQ DKSNDDGKKK MMHREIEKKR RQEMAALYAS 60 LRSVLPLEYI KGKRSLAEHM NEAVNYIKHL QTRIKVLGRR RDELKIGTSS LPSLSASSST 120 SSTSPRVAVH PCFVGVEIVI SRGGSVEQGL VLSRLLKILL GQGLTVISCA TTQVNERLVY 180 TIQSEVSDPA WGDFCGNDLE FQISSNDPHQ EDMMQIEDLV PGHEVLPEGS DPSHNNKKMG 240 KGKQQHMILF AHPDNNEANP SDVKVERKIV RRDNERQRRQ LMAVLNASLR SLLPHELIKG 300 KRSISEHMNE TVNYITQMKR KIQELNAKKE KLRRLYEYDS SAQEFGLENE TLGHDLANSV 360 TNIMVGPTFL GGVEVVISSS CSEDEGLPLS RVLKLLLAEG LCVVECSSTR VNERVFHTIQ 420 CEIAVKRLKT MSAKAEMEFA VEVEILGRVR HRNLLGLRGF YAGGEERLIV YDYMPNHSLI 480 THLHGQLAAD CLLDWPRRMS IAIGSAEDSR LKGKFDREQV KSTVLIAMKC TDNSPDNRPT 540 MIEVVDWLKG GIGRRKKEIT NHVDETEDEE EVYDETDTDH ENYGMELSDA RENITRARSQ 600 RR

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MDVGMFNTIN TGGQQGKSSL ALTLDSAENQ DKSNDDGKKK MMHREIEKKR RQEMAALYAS  60
LRSVLPLEYI KGKRSLAEHM NEAVNYIKHL QTRIKVLGRR RDELKIGTSS LPSLSASSST  120
SSTSPRVAVH PCFVGVEIVI SRGGSVEQGL VLSRLLKILL GQGLTVISCA TTQVNERLVY  180
TIQSEVSDPA WGDFCGNDLE FQISSNDPHQ EDMMQIEDLV PGHEVLPEGS DPSHNNKKMG  240
KGKQQHMILF AHPDNNEANP SDVKVERKIV RRDNERQRRQ LMAVLNASLR SLLPHELIKG  300
KRSISEHMNE TVNYITQMKR KIQELNAKKE KLRRLYEYDS SAQEFGLENE TLGHDLANSV  360
TNIMVGPTFL GGVEVVISSS CSEDEGLPLS RVLKLLLAEG LCVVECSSTR VNERVFHTIQ  420
CEIAVKRLKT MSAKAEMEFA VEVEILGRVR HRNLLGLRGF YAGGEERLIV YDYMPNHSLI  480
THLHGQLAAD CLLDWPRRMS IAIGSAEDSR LKGKFDREQV KSTVLIAMKC TDNSPDNRPT  540
MIEVVDWLKG GIGRRKKEIT NHVDETEDEE EVYDETDTDH ENYGMELSDA RENITRARSQ  600
RR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	335	RKIQELNAKKEKLRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	4e-42	bHLH family protein