PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001405.1_g190.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 254aa    MW: 28344.5 Da    PI: 9.9037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001405.1_g190.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-1268118355
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                ++h e+Er+RR+++ +  + Lr+llP  +   ++K s ++   +Av+YIk+Lq
  Pav_sc0001405.1_g190.1.mk  68 MMHRENERQRRQEMGTLHASLRSLLPLEF--IKGKRSISDHMNEAVNYIKHLQ 118
                                68*************************65..*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MMFPLHQGKK LVFQTSSNPP QKHTISEDRI LGHAISTGKS RRRKLVAAFN YDMIDQNSND  60
HNKKKKMMMH RENERQRRQE MGTLHASLRS LLPLEFIKGK RSISDHMNEA VNYIKHLQSR  120
IKRLDAKRAE LKKCSNIIST TGTDHGATTG SSDGRSPSCL TVHPCCGGVQ IVISCRGFRS  180
TKDGLSLSFS ISRVLEVLLE QGLAVVSCVS SKGNDRLLHT IQCEVNDLEG IDLSGLEQKL  240
AELVSPYSSR CISE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-46bHLH family protein