PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001392.1_g310.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 610aa MW: 66258.5 Da PI: 7.7389

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001392.1_g310.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	64	84	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r+H Pav_sc0001392.1_g310.1.mk 64 CEVCNKGFSSGKALGGHMRMH 84 ********************9 PP
2	zf-C2H2	15.7	4.2e-05	138	158	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F++ +L H+r+H Pav_sc0001392.1_g310.1.mk 138 CCVCGKNFPSMKSLFGHMRSH 158 9*******************9 PP
3	zf-C2H2	17.6	1e-05	431	453	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ CgksF+++ L H+++H Pav_sc0001392.1_g310.1.mk 431 YKCSLCGKSFPSHQALGGHMSSH 453 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MDIEDQETRF RPRAGDQEQQ PNKKTNQETE SNNGGLFAKL KFPKPEPLDQ ERKYPAPPEF 60 TRICEVCNKG FSSGKALGGH MRMHVQANRE LFQARKNKIQ KPNKILKPNN SDVSSSNGGG 120 DFGVEGNSNS NSSMKPDCCV CGKNFPSMKS LFGHMRSHPE REWRGIQPPP TIAKNSSSST 180 LSDAVPQNNN KADDHQIDSA ATPVGSNNSA PDLSKTLPGW SLTARRGRKS IGSSGNSESV 240 SGLDLSPGVE EQMEEAVHDL LMLAQSNPCF YGLSDKGKGA EMCEATNSNF FITNNSNQAD 300 YIKDKNQVID YEGTSKKRKG TEMCFPSKNM KSEKKWFDEY DGVKGKGVLG IGFGPEKSSV 360 KNFLKFGPME DNKNNNIEEE LSDSQNSESI VLASMKRRKR RKMKLVDLEG VVGEIIGAQG 420 HHQSLHQKLR YKCSLCGKSF PSHQALGGHM SSHNKLKNNN NNNIMNHSSL DDQSASADVS 480 AAEGGHNLDE AQTTMALDQD HHVAGAGSGS GAGGLGAHQA HQAHHQCKIC NKIFPTGQAL 540 GGHKRCHWTG PTEQLLPQSS QVASPGEASQ NAGRKVLNFD LNELPAMECE EGTDQYGAAG 600 YATSSHNSAT

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MDIEDQETRF RPRAGDQEQQ PNKKTNQETE SNNGGLFAKL KFPKPEPLDQ ERKYPAPPEF  60
TRICEVCNKG FSSGKALGGH MRMHVQANRE LFQARKNKIQ KPNKILKPNN SDVSSSNGGG  120
DFGVEGNSNS NSSMKPDCCV CGKNFPSMKS LFGHMRSHPE REWRGIQPPP TIAKNSSSST  180
LSDAVPQNNN KADDHQIDSA ATPVGSNNSA PDLSKTLPGW SLTARRGRKS IGSSGNSESV  240
SGLDLSPGVE EQMEEAVHDL LMLAQSNPCF YGLSDKGKGA EMCEATNSNF FITNNSNQAD  300
YIKDKNQVID YEGTSKKRKG TEMCFPSKNM KSEKKWFDEY DGVKGKGVLG IGFGPEKSSV  360
KNFLKFGPME DNKNNNIEEE LSDSQNSESI VLASMKRRKR RKMKLVDLEG VVGEIIGAQG  420
HHQSLHQKLR YKCSLCGKSF PSHQALGGHM SSHNKLKNNN NNNIMNHSSL DDQSASADVS  480
AAEGGHNLDE AQTTMALDQD HHVAGAGSGS GAGGLGAHQA HQAHHQCKIC NKIFPTGQAL  540
GGHKRCHWTG PTEQLLPQSS QVASPGEASQ NAGRKVLNFD LNELPAMECE EGTDQYGAAG  600
YATSSHNSAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	346	KKRKGTEMCFPSKNMKSEKKWFDEYDGVKGK
2	396	402	KRRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	4e-17	C2H2 family protein