PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001381.1_g020.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 826aa MW: 91267.5 Da PI: 5.1883

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001381.1_g020.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	371	394	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+++F k+++ +H+ + H Pav_sc0001381.1_g020.1.mk 371 FECHKCSMTFGEKDSYLQHLLSfH 394 89******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence
MATVDSLTHI DITTLSQSEL HALSLCSSSS SAFNLFGAQD LVVPKIDRSV FNESAGSRRQ 60 TYSRPRRSQS DASTGHRRRV AGLHATPKLS PVPPDDPERN ENHAIIAHLK NFISQDPKFD 120 QIDFEAAHMA SFPMLLGPNH ELRSGIVGFE GREDEGVKKR KRGRKPKVKV LSMEGEGYVG 180 MEMVNKNGAA VDVSGLANVE DPFGEELRRR TVGLETEEQL LGFMRELGGQ WGSRRKKRKI 240 VDANEFGDAL PVGWKLLLGL KRKEGRAWIY CRRFISPTGQ QFLSCKEVSS FLHSVFGFNN 300 VRQPDGRGGE NLQEECIMTT ENQHSDKDGG RRQYVNSSSA LVVSSITNER EKEVSLSGME 360 NLAEVQIRDL FECHKCSMTF GEKDSYLQHL LSFHQRTTRR YRLGSTVGDG VIIKDGKYEC 420 QFCHKVFLER RRYNGHVGIH VRNYVRRVEE SPGPTTVQKR IESPSGEGFP SRISKMDALI 480 EIAQNSILET STAGPNNESK CGPAANSHQE MNIDSPLSEP DLDGSMIDRT ASDQHDSEHT 540 ITDGSMEEAD DPMEVVDVKM DSGMNTTSKE KNGKPSESSL EKDGLGFTSD ELEKSEKSGT 600 NQDGASQCLI HASSNEKIIS EVVGNENLNF TSTLEHPNAV ELSNKKNSEP AVEFGSSNDH 660 GPANDTLIEP VRQANEENEI QSGISDSSMS LVQPLVCFPT SNAISDKGEQ HVSTAGQRHN 720 HETGFEELRL DEIEPLKYGF AGGQESITMQ EVPMDLTNNA EMERAFGSSV QFEQEVMLSM 780 AASHQLTCVW CGVEFNHEAV DSEIQADSVG FMCPACKAKI SGPLNV

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence

MATVDSLTHI DITTLSQSEL HALSLCSSSS SAFNLFGAQD LVVPKIDRSV FNESAGSRRQ  60
TYSRPRRSQS DASTGHRRRV AGLHATPKLS PVPPDDPERN ENHAIIAHLK NFISQDPKFD  120
QIDFEAAHMA SFPMLLGPNH ELRSGIVGFE GREDEGVKKR KRGRKPKVKV LSMEGEGYVG  180
MEMVNKNGAA VDVSGLANVE DPFGEELRRR TVGLETEEQL LGFMRELGGQ WGSRRKKRKI  240
VDANEFGDAL PVGWKLLLGL KRKEGRAWIY CRRFISPTGQ QFLSCKEVSS FLHSVFGFNN  300
VRQPDGRGGE NLQEECIMTT ENQHSDKDGG RRQYVNSSSA LVVSSITNER EKEVSLSGME  360
NLAEVQIRDL FECHKCSMTF GEKDSYLQHL LSFHQRTTRR YRLGSTVGDG VIIKDGKYEC  420
QFCHKVFLER RRYNGHVGIH VRNYVRRVEE SPGPTTVQKR IESPSGEGFP SRISKMDALI  480
EIAQNSILET STAGPNNESK CGPAANSHQE MNIDSPLSEP DLDGSMIDRT ASDQHDSEHT  540
ITDGSMEEAD DPMEVVDVKM DSGMNTTSKE KNGKPSESSL EKDGLGFTSD ELEKSEKSGT  600
NQDGASQCLI HASSNEKIIS EVVGNENLNF TSTLEHPNAV ELSNKKNSEP AVEFGSSNDH  660
GPANDTLIEP VRQANEENEI QSGISDSSMS LVQPLVCFPT SNAISDKGEQ HVSTAGQRHN  720
HETGFEELRL DEIEPLKYGF AGGQESITMQ EVPMDLTNNA EMERAFGSSV QFEQEVMLSM  780
AASHQLTCVW CGVEFNHEAV DSEIQADSVG FMCPACKAKI SGPLNV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	263	RRKKRKIVDANEFGDALPVGWKLLLGLKRK
2	235	264	RRKKRKIVDANEFGDALPVGWKLLLGLKRK
3	236	265	RRKKRKIVDANEFGDALPVGWKLLLGLKRK