PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001364.1_g200.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 430aa MW: 46242.2 Da PI: 9.6306

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001364.1_g200.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.2e-05	190	212	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ F+ ++L++H+ H Pav_sc0001364.1_g200.1.mk 190 VCSQCGEIFPKMDSLEHHQAIrH 212 8******************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MALLTFVPEA TEPKNKKKAP PSKRRQKQSS SSKKQQNPPS SSSSSWDQIK NLLTCKQIEG 60 SRVHDPSKNH NIVNGGAGAA AAGYSKLGSS CSSICSFRDV VHGNTRVVHR ADNSPESSSL 120 GQETGLLGRK HVTRSSSSRS NATGTSAAYN TTSASSSSRG MQFRKLSGCY ECHMIVDPSR 180 YPIPRSSVCV CSQCGEIFPK MDSLEHHQAI RHAVSELGVE DSGRNIVEII FKSSWQKKDI 240 PICKIERILK VHNTQRTIQR FEDCRDAVKN RALGTTRKNP RCAADGNELL RFHCTSISCT 300 LGARGSSSLC GSVPGCGVCT IIRHGFQGKA GGEGGKGVRT TASSGRAHDS LSCTEGRRAM 360 LVCRVIAGRV RRIADDAPTE EDALSSLSAP GSYDSVAGFA GIYSNLEELV VHNPRAILPC 420 FVVIYKALES

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MALLTFVPEA TEPKNKKKAP PSKRRQKQSS SSKKQQNPPS SSSSSWDQIK NLLTCKQIEG  60
SRVHDPSKNH NIVNGGAGAA AAGYSKLGSS CSSICSFRDV VHGNTRVVHR ADNSPESSSL  120
GQETGLLGRK HVTRSSSSRS NATGTSAAYN TTSASSSSRG MQFRKLSGCY ECHMIVDPSR  180
YPIPRSSVCV CSQCGEIFPK MDSLEHHQAI RHAVSELGVE DSGRNIVEII FKSSWQKKDI  240
PICKIERILK VHNTQRTIQR FEDCRDAVKN RALGTTRKNP RCAADGNELL RFHCTSISCT  300
LGARGSSSLC GSVPGCGVCT IIRHGFQGKA GGEGGKGVRT TASSGRAHDS LSCTEGRRAM  360
LVCRVIAGRV RRIADDAPTE EDALSSLSAP GSYDSVAGFA GIYSNLEELV VHNPRAILPC  420
FVVIYKALES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-165	C2H2 family protein