PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001345.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 751aa    MW: 82327.6 Da    PI: 6.2956
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001345.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.4e-24132233199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +g
  Pav_sc0001345.1_g010.1.mk 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAG 213
                                99*****************************8544444..48****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+v+F   ++++ +l+++++r+
  Pav_sc0001345.1_g010.1.mk 214 DSVLFI--WNEKNQLLLGIRRA 233
                                ******..8899999****997 PP
2Auxin_resp1193.9e-39258341183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+k
  Pav_sc0001345.1_g010.1.mk 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWTNSHWRSVK 341
                                79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    
MRLSTSSSSS GFNHQPQEGE KKCLNSELWH ACAGPLVSLP LLGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDVYLLPAE  120
LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDSV RWTNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWPSGIPSFH GLKDGDMGVN APLMWLQGGV GDQGIQSLNF  420
QGFGVTPWMQ PRLDASMAGL QPEVYQAMAA AALQEMRTVD SSKCVSQSLL PFQQSSNVSN  480
GPAAVLQRQA IPSQPQQQSF PDPVGNPISS SDVPPIHSIL GSLSQDGASH LLNLSGSNSV  540
ISSSLLPKQI TGEQQLSSGA AQCVLPQVEQ LGTPQSNISE LTALPPFPGR EYSAFQGGTD  600
PQSNLLFGVN IDSSSLMLHS GIPTLRNIGN GNDSLSMPFG ASSYTSATGN DFPLNSDMTT  660
SSCVDESGFL QSSENVDQVN PTRNFVKVHK SGSFGRSLDI SKFSSYDELR SELARMFGLE  720
GQLEDPQRSG WQLVFVDREN DVLLLGDDPW Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein