PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001314.1_g050.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 916aa MW: 101888 Da PI: 6.1255

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001314.1_g050.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.5	1.5e-10	261	305	53	99
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ Pav_sc0001314.1_g050.1.mk 261 AGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 305 678999***********************..8899999**997 PP
2	Auxin_resp	119.3	3.1e-39	330	413	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+v+YnPras+seFv++++k+ ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Pav_sc0001314.1_g050.1.mk 330 AAHAASTNSCFTVFYNPRASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 413 79*****************************986599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence
MKLSTSGLGQ QDHEAAGGGA EKKCLNSELW HACAGPLVSL PTPGTRVVYF PQGHSDQVAA 60 TTNKQVDAHI PNYPSLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLTPQ EQKETFLPME 120 LGIPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSLQPPAQ ELIARDLHDV 180 EWKFRHIFRG SLLDLWHLDN TYLLSCGCSL SFYSTWMSSS LITAVLTVLE RLALSDISGA 240 LAVGVVAWRK QCMTPNTGTF AGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL 300 GIRRATRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSCF TVFYNPRASP SEFVIPLSKY 360 IKAVFHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST 420 AGERQPRVSL WEIEPLTTFP MYPSLFPLRL KRPWHPGASS MQDNRDEANS LMWLRGGTGE 480 QGLHSMNFQP VGMFPWMQQR LDSTLIGNDH NPQYQAMLAA GLQNLGSGDQ LRQHMMHFQQ 540 PFQYVQQSSS HNPMLQLQQQ IQQSIPHNIL QAQPQVSLEN LPQHLLQQQF NNQTEEQVQQ 600 QQNTYHDALK VQTEQLQQSQ QMNVPSPSFP KTDFSDSNTK FSASTTPRQN MLGTLCPEGS 660 GNLLSSSRAG HSMQTEQLPQ QSWAPKYAHA QVNAFANSMS FPPFNEKDNA VEQENCNSDS 720 QNPTLFGVNI ESSGLLFPTT APSFATSSND ADMSMPLGDS GFQSSLYGCM QDSSELLHSA 780 GQVDPPTPNC TFVKVYKSGS VGRSLDISRF SSYHELREEL GQMFGIEGKL EDRLRSGWQL 840 VFVDRENDVL LLGDDPWESF VNNVWYIKIL SPEDVHKMGD QAVEPFSPNT GQRLNSGGGE 900 AQDIVSGLPS LGSLEY

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence

MKLSTSGLGQ QDHEAAGGGA EKKCLNSELW HACAGPLVSL PTPGTRVVYF PQGHSDQVAA  60
TTNKQVDAHI PNYPSLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLTPQ EQKETFLPME  120
LGIPSKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSLQPPAQ ELIARDLHDV  180
EWKFRHIFRG SLLDLWHLDN TYLLSCGCSL SFYSTWMSSS LITAVLTVLE RLALSDISGA  240
LAVGVVAWRK QCMTPNTGTF AGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL  300
GIRRATRPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSCF TVFYNPRASP SEFVIPLSKY  360
IKAVFHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST  420
AGERQPRVSL WEIEPLTTFP MYPSLFPLRL KRPWHPGASS MQDNRDEANS LMWLRGGTGE  480
QGLHSMNFQP VGMFPWMQQR LDSTLIGNDH NPQYQAMLAA GLQNLGSGDQ LRQHMMHFQQ  540
PFQYVQQSSS HNPMLQLQQQ IQQSIPHNIL QAQPQVSLEN LPQHLLQQQF NNQTEEQVQQ  600
QQNTYHDALK VQTEQLQQSQ QMNVPSPSFP KTDFSDSNTK FSASTTPRQN MLGTLCPEGS  660
GNLLSSSRAG HSMQTEQLPQ QSWAPKYAHA QVNAFANSMS FPPFNEKDNA VEQENCNSDS  720
QNPTLFGVNI ESSGLLFPTT APSFATSSND ADMSMPLGDS GFQSSLYGCM QDSSELLHSA  780
GQVDPPTPNC TFVKVYKSGS VGRSLDISRF SSYHELREEL GQMFGIEGKL EDRLRSGWQL  840
VFVDRENDVL LLGDDPWESF VNNVWYIKIL SPEDVHKMGD QAVEPFSPNT GQRLNSGGGE  900
AQDIVSGLPS LGSLEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	ARF family protein