PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001309.1_g220.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 313aa    MW: 34970.1 Da    PI: 8.8305
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001309.1_g220.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.95.3e-26106186171
                    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                                r+eksL lltq+f+kl+ +s+e++++l++vak L+ +      +++k+RRiYDi+NVL+++nliek     ++k++++w g
  Pav_sc0001309.1_g220.1.mk 106 RREKSLALLTQNFVKLFVCSTEEMISLDDVAKLLLGDaqsasAMRTKVRRIYDIANVLSSMNLIEKthtpdTRKPAFKWLG 186
                                689*******************************************************************99*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MAAPAAPSSG PSTRKHGYSR KQKSLGLLCS NFLGLYNRDG VTSIGLDDAA SRLEGLRENC  60
INFSGNDDAK VSDDEDDEER CGSQPNDKSN PTVNPQPPAD QKPDNRREKS LALLTQNFVK  120
LFVCSTEEMI SLDDVAKLLL GDAQSASAMR TKVRRIYDIA NVLSSMNLIE KTHTPDTRKP  180
AFKWLGLRGK EENLVPNESR KRAFGTDITN VISKRGKLES SIGGELDAQK QRQHDLEDSK  240
DGSKSYQFGP FAPVTIARPG NSNMRRVHDW EKLTSTYRPQ YQNQALKDLF SHYMEAWKSW  300
YSEVAGKNPI RIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.24e-99E2F/DP family protein