PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001280.1_g530.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 383aa MW: 41097.7 Da PI: 9.7392

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001280.1_g530.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	138.5	1.9e-43	81	156	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls+ak y++rhkvC hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ Pav_sc0001280.1_g530.1.mk 81 RCQVEGCQVDLSDAKAYYSRHKVCGLHSKTPMVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 156 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MTLMEMGSSS MTDSGSSSSS SPPNSSTESL NGLKFGRKIY FEDAVLGAPH KSGSAGSSSS 60 GATPPKKQRG VNLAQPGQPP RCQVEGCQVD LSDAKAYYSR HKVCGLHSKT PMVIVAGLEQ 120 RFCQQCSRFH QLPEFDQGKR SCRRRLAGHN ERRRKPPPGS MLSARFGRLS SSIYENSSRV 180 GSFLMDFTAY PKLSGRDAWA TTRTSERVPG NQNSNDTGKF LQNPWQSNSE ISPSGLYLQG 240 SAGGTSYPGP GIPPGECITG VTDSSCALSL LSSQPWGSRN RVSGVGMNTV INTQGPPVGQ 300 PITHAGTSNH FPTTLWGFKG NAGSSSHEML PDLGLGQISQ PPLSTQYSGV LELSQQSSRR 360 QQQMELGHSR GFDTSSQHIH WSL

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MTLMEMGSSS MTDSGSSSSS SPPNSSTESL NGLKFGRKIY FEDAVLGAPH KSGSAGSSSS  60
GATPPKKQRG VNLAQPGQPP RCQVEGCQVD LSDAKAYYSR HKVCGLHSKT PMVIVAGLEQ  120
RFCQQCSRFH QLPEFDQGKR SCRRRLAGHN ERRRKPPPGS MLSARFGRLS SSIYENSSRV  180
GSFLMDFTAY PKLSGRDAWA TTRTSERVPG NQNSNDTGKF LQNPWQSNSE ISPSGLYLQG  240
SAGGTSYPGP GIPPGECITG VTDSSCALSL LSSQPWGSRN RVSGVGMNTV INTQGPPVGQ  300
PITHAGTSNH FPTTLWGFKG NAGSSSHEML PDLGLGQISQ PPLSTQYSGV LELSQQSSRR  360
QQQMELGHSR GFDTSSQHIH WSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	3e-67	SBP family protein