PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001280.1_g130.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 563aa MW: 62241.9 Da PI: 6.1476

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001280.1_g130.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Pav_sc0001280.1_g130.1.mk 61 YSCSFCRREFRSAQALGGHMNVH 83 99*******************99 PP
2	zf-C2H2	16.6	2.2e-05	384	406	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sFs+ L H++ H Pav_sc0001280.1_g130.1.mk 384 YTCTFCNRSFSNAQALGGHMNIH 406 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MEQARYWMWA KRKHNSLSSS QHDHLQVPIS NPSNDDSWEE QAFAEDAAGP LGGCIWPPRS 60 YSCSFCRREF RSAQALGGHM NVHRRDRARL KQSPNDETAL QNHHHPDDHS VQNHNPFSSS 120 SLGSFQYPSH QVCALAYNPN NPSSDPGATI ASSSPSSGSR VSAQLPCKEN CADQTLKILP 180 SSSASVSFPQ SWSILGTNRN NYDKSVARNI IEAEKISGAV ESGCRAKGDH HVTSTTDLHN 240 LSVSLNLVVR CARPSVSDDE DEAIISCKRR RTEDVPSSIP FFLKSGSVDK VHHLQSEGFE 300 LSCTSCTSSI EDLDLELRLG DRPKNLIHLG LKSVSASKLE EQAQPNARLT LTISEAPNPP 360 NVSTLEMLRS PFVSYIGSGQ AKSYTCTFCN RSFSNAQALG GHMNIHRRDR ARIRQFSEDQ 420 NQLANISSTD GITKNPSAHH SRANSEDKNS IQMELNETNI PRNPILSYPF TRDEDDDVVI 480 IDATNKGKVS IEEVQVQLQL PLFVEEPSGL ACTVDINKIT VECTSGGCRD EEMMKRAEEL 540 DLELRLGPEP TETPSTLSTR EFF

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MEQARYWMWA KRKHNSLSSS QHDHLQVPIS NPSNDDSWEE QAFAEDAAGP LGGCIWPPRS  60
YSCSFCRREF RSAQALGGHM NVHRRDRARL KQSPNDETAL QNHHHPDDHS VQNHNPFSSS  120
SLGSFQYPSH QVCALAYNPN NPSSDPGATI ASSSPSSGSR VSAQLPCKEN CADQTLKILP  180
SSSASVSFPQ SWSILGTNRN NYDKSVARNI IEAEKISGAV ESGCRAKGDH HVTSTTDLHN  240
LSVSLNLVVR CARPSVSDDE DEAIISCKRR RTEDVPSSIP FFLKSGSVDK VHHLQSEGFE  300
LSCTSCTSSI EDLDLELRLG DRPKNLIHLG LKSVSASKLE EQAQPNARLT LTISEAPNPP  360
NVSTLEMLRS PFVSYIGSGQ AKSYTCTFCN RSFSNAQALG GHMNIHRRDR ARIRQFSEDQ  420
NQLANISSTD GITKNPSAHH SRANSEDKNS IQMELNETNI PRNPILSYPF TRDEDDDVVI  480
IDATNKGKVS IEEVQVQLQL PLFVEEPSGL ACTVDINKIT VECTSGGCRD EEMMKRAEEL  540
DLELRLGPEP TETPSTLSTR EFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	8e-26	C2H2 family protein