PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001275.1_g050.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 2090aa MW: 230415 Da PI: 8.3172

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001275.1_g050.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.6e-07	1958	1979	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tGtC++G++Ck +H++ Pav_sc0001275.1_g050.1.mk 1958 CPSFEATGTCPHGPKCKLHHPR 1979 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2090 aa Download sequence
MDLPQYLHQH PRYAPSHPYP ADPLNFPNYP HRHHNNHHYN HHHHQQPPLQ IQPPPPPQPP 60 LPPTSSYHPL PPPPPPPPHP YNPSQPQLPF DSEHSRTFHS LHDFPVSSPR VSSRVTLDAE 120 RHRHHRLPQF DLPYLEKNPD SWDPSRAYLD FERDRESHKP QFRLESEGSG SARFRSEYNE 180 QLLRDQRVVD DEYNNRRRAR VEPNSEIAYR ELGFVSNQNS NHLNSNNLDF DSKSGGYDGR 240 YDELMRSGGG RRDEVYENTQ RWVHHDRQAS RELYDPFEVD ETNGGRNVSG NREYYGSESG 300 RGSSNNRRKQ IQKKSALLRL QMAKPSHKNH SAYFDNSGSS SHRGKGHYEY SDREMDEEER 360 GGSPLELDVS FKSNSLVAKT VGNRNFKRDS VFDREFSNSQ LTKLSEDAVH LDSSVVVEDM 420 TSNSDKDLRL LEEEVTTSGV ESRCDIDSQP CSNVTDDSFG KSEVERASKS KVLQRADKSA 480 GSGQMPSLKV SKKKKVAKKV VKKVINPQPL PKNKIDEPGV ADSFICRPSA AFGADRGETS 540 SFADPCSNDV HALPVNKKVD GSSLNMLSDE HGTEANSCSK STGSNSTSKL GSSNHEEFNI 600 DQGPLTVDTS VQGLLTISNF SNNVTDSLRV ASCPETDGVI DVSKQICHSG NSLSLDNVIR 660 KESSEAMLSV EGNANSGFLS SEKIMMHDDI MNANGSGHGT ETTLDIESGR NVLHQEIIVH 720 DIGTVDAINE NVCKYQFPTS LQIGFVEELP KGISSAESSM TVGLSSSGET LAVCSNSGRG 780 TTWDSDKVCT NYDENIIGKQ PSADGASRSF GICATQRSPD ITKSVGDSKG VTHKNKKKRK 840 VRSRLDSSRA SNTCAEPINV SVNKNSVDTT VSSSLKDASH AEVAVFGVGK LDIGSQRVND 900 GVSVMHGKSS VDGLCEAKLS TRSDVNCDPN ETSPKYIKKR KLSASHLVLT TSQTNDGPTD 960 KSTFYTDAPL KSNDVPTQEE DEVAASSTGL LLATANLMPS QEGSTVFLKD NIAGVLSDAV 1020 AAARDAFTND GMKSEHQGVD SCSIYEESVS DTLFLCPSQL RNEQKEAGTQ VMVINNHHLD 1080 IMDIESNREE NFDIVATDEQ VIIHGETALC RVSSEVEPPD LGYKFSCTDM ESDYVSVKDT 1140 LPFASNRLLL CANDNEVSTT NSNDEGVESV PDTLSDTGSP ETSTDVPGVQ MRTCSPSVIK 1200 ISDGKDCGDD QKLDLKSVVE VGCSASAQNS LSECTKSNLT PHPVTEGGQS VTGKTVALPL 1260 QDIKKTAHGL NLVTAESRLK NQLGQATHRI VPGHSYSVFS TSKKTGSSNH MAKPRTWHRN 1320 GNASASSLPA SMPFSSTVPP QRILPPKDGK LQSNSYVRKG NSLVRKPVPV AALPQSSHGF 1380 SSAVYRLNSL GIDGLKKNAG SDSRVDVKNP PSLVRTGEMN APFDRPRPLL PNGAKLSTYD 1440 AISLGVRTSS QLAEPLLSGE TTSDPMNCLE TKDAKIVVND SLVTSETQEN LSGPFNSLEN 1500 QTELHDGNLA PSNTKNIVYV KRKLNQLVAS SSPCDLPVHN ADKIQHSSFD GYYKRRKNQL 1560 IRTSSEGHAK QAVIMSNDNL NSQVQKVPKI VPSRIYGKKR SQKVIAKTSK TGKNSLVWTP 1620 RGTQASNNDG DSFDHQKVLP HLFPWKRARH WRTSMQSQAS NFKYSSASTI SKKLLLSRRR 1680 DTVYTRSTHG FSLRMYKVLS VGGSSLKWSK SIESRSKKAN EEATRAVAAV EKKKREHSGA 1740 ACVGSGSKFR NNISGKRIFR IGCVRYKMDP SRRTLQRISD DGSSSSAVLN PEKDAKRSYV 1800 PRRLVIGNDE YVRIGNGNQL IRNPKKRTRI LANERVRWSL HTARLRLAKK RKYCQFFTRF 1860 GKCNKDDGKC PYIHDPSKIA VCTKFLKGLC SNPNCKLTHK VIPERMQDCS YFLQGLCSNE 1920 SCPYRHVNVN PKASTCEGFL KGYCADGNEC RKKHSYVCPS FEATGTCPHG PKCKLHHPRN 1980 RTKGKKRKRT REQKNAWGRY FVSKDINFSE PRAVSGKHCA QNGDGIFDDG RAADFISIDA 2040 SDEEAGESND PINEQAASCD SDSSELELDD LDELIKPVRL LDRSLKTNIL

Sequence ? help Back to Top

Protein Sequence Length: 2090 aa Download sequence

MDLPQYLHQH PRYAPSHPYP ADPLNFPNYP HRHHNNHHYN HHHHQQPPLQ IQPPPPPQPP  60
LPPTSSYHPL PPPPPPPPHP YNPSQPQLPF DSEHSRTFHS LHDFPVSSPR VSSRVTLDAE  120
RHRHHRLPQF DLPYLEKNPD SWDPSRAYLD FERDRESHKP QFRLESEGSG SARFRSEYNE  180
QLLRDQRVVD DEYNNRRRAR VEPNSEIAYR ELGFVSNQNS NHLNSNNLDF DSKSGGYDGR  240
YDELMRSGGG RRDEVYENTQ RWVHHDRQAS RELYDPFEVD ETNGGRNVSG NREYYGSESG  300
RGSSNNRRKQ IQKKSALLRL QMAKPSHKNH SAYFDNSGSS SHRGKGHYEY SDREMDEEER  360
GGSPLELDVS FKSNSLVAKT VGNRNFKRDS VFDREFSNSQ LTKLSEDAVH LDSSVVVEDM  420
TSNSDKDLRL LEEEVTTSGV ESRCDIDSQP CSNVTDDSFG KSEVERASKS KVLQRADKSA  480
GSGQMPSLKV SKKKKVAKKV VKKVINPQPL PKNKIDEPGV ADSFICRPSA AFGADRGETS  540
SFADPCSNDV HALPVNKKVD GSSLNMLSDE HGTEANSCSK STGSNSTSKL GSSNHEEFNI  600
DQGPLTVDTS VQGLLTISNF SNNVTDSLRV ASCPETDGVI DVSKQICHSG NSLSLDNVIR  660
KESSEAMLSV EGNANSGFLS SEKIMMHDDI MNANGSGHGT ETTLDIESGR NVLHQEIIVH  720
DIGTVDAINE NVCKYQFPTS LQIGFVEELP KGISSAESSM TVGLSSSGET LAVCSNSGRG  780
TTWDSDKVCT NYDENIIGKQ PSADGASRSF GICATQRSPD ITKSVGDSKG VTHKNKKKRK  840
VRSRLDSSRA SNTCAEPINV SVNKNSVDTT VSSSLKDASH AEVAVFGVGK LDIGSQRVND  900
GVSVMHGKSS VDGLCEAKLS TRSDVNCDPN ETSPKYIKKR KLSASHLVLT TSQTNDGPTD  960
KSTFYTDAPL KSNDVPTQEE DEVAASSTGL LLATANLMPS QEGSTVFLKD NIAGVLSDAV  1020
AAARDAFTND GMKSEHQGVD SCSIYEESVS DTLFLCPSQL RNEQKEAGTQ VMVINNHHLD  1080
IMDIESNREE NFDIVATDEQ VIIHGETALC RVSSEVEPPD LGYKFSCTDM ESDYVSVKDT  1140
LPFASNRLLL CANDNEVSTT NSNDEGVESV PDTLSDTGSP ETSTDVPGVQ MRTCSPSVIK  1200
ISDGKDCGDD QKLDLKSVVE VGCSASAQNS LSECTKSNLT PHPVTEGGQS VTGKTVALPL  1260
QDIKKTAHGL NLVTAESRLK NQLGQATHRI VPGHSYSVFS TSKKTGSSNH MAKPRTWHRN  1320
GNASASSLPA SMPFSSTVPP QRILPPKDGK LQSNSYVRKG NSLVRKPVPV AALPQSSHGF  1380
SSAVYRLNSL GIDGLKKNAG SDSRVDVKNP PSLVRTGEMN APFDRPRPLL PNGAKLSTYD  1440
AISLGVRTSS QLAEPLLSGE TTSDPMNCLE TKDAKIVVND SLVTSETQEN LSGPFNSLEN  1500
QTELHDGNLA PSNTKNIVYV KRKLNQLVAS SSPCDLPVHN ADKIQHSSFD GYYKRRKNQL  1560
IRTSSEGHAK QAVIMSNDNL NSQVQKVPKI VPSRIYGKKR SQKVIAKTSK TGKNSLVWTP  1620
RGTQASNNDG DSFDHQKVLP HLFPWKRARH WRTSMQSQAS NFKYSSASTI SKKLLLSRRR  1680
DTVYTRSTHG FSLRMYKVLS VGGSSLKWSK SIESRSKKAN EEATRAVAAV EKKKREHSGA  1740
ACVGSGSKFR NNISGKRIFR IGCVRYKMDP SRRTLQRISD DGSSSSAVLN PEKDAKRSYV  1800
PRRLVIGNDE YVRIGNGNQL IRNPKKRTRI LANERVRWSL HTARLRLAKK RKYCQFFTRF  1860
GKCNKDDGKC PYIHDPSKIA VCTKFLKGLC SNPNCKLTHK VIPERMQDCS YFLQGLCSNE  1920
SCPYRHVNVN PKASTCEGFL KGYCADGNEC RKKHSYVCPS FEATGTCPHG PKCKLHHPRN  1980
RTKGKKRKRT REQKNAWGRY FVSKDINFSE PRAVSGKHCA QNGDGIFDDG RAADFISIDA  2040
SDEEAGESND PINEQAASCD SDSSELELDD LDELIKPVRL LDRSLKTNIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	836	841	KKKRKV
2	1985	1990	KKRKRT