PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pav_sc0001239.1_g120.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 209aa MW: 22943.6 Da PI: 9.5856 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.8 | 3.2e-07 | 14 | 34 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++f +t Ck+G rCkF+H++ Pav_sc0001239.1_g120.1.mk 14 KYFIKTQRCKFGMRCKFNHPK 34 6999***************96 PP | |||||||
2 | zf-CCCH | 27.8 | 4.2e-09 | 57 | 81 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++ G+Ck+G++Ck +H++ Pav_sc0001239.1_g120.1.mk 57 EPPCAFYLKAGQCKFGATCKVHHPK 81 79******************99985 PP | |||||||
3 | zf-CCCH | 23.4 | 1e-07 | 126 | 144 | 1 | 19 |
--S---SGGGGTS--TTTT CS zf-CCCH 1 yktelCrffartGtCkyGd 19 +++++C+f+++tG CkyG+ Pav_sc0001239.1_g120.1.mk 126 PGEPNCQFYLKTGSCKYGA 144 5799**************7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence |
MSSPAFPASN APLKYFIKTQ RCKFGMRCKF NHPKDKLAAA VASENADVFA LPERPAEPPC 60 AFYLKAGQCK FGATCKVHHP KEIQIPSAEQ ENKIGETGTT IQPEGTGFAV KPPALSFNSK 120 EPPVIPGEPN CQFYLKTGSC KYGAIWAQLK RTEKGTMRRS YCCLNHALSA VYNISFGEKK 180 ATQLTTLVLQ LSLPKAQSIN CNFYFIKAG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 2e-42 | C3H family protein |