PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001181.1_g260.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 111aa MW: 12990 Da PI: 8.3777 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48 | 2e-15 | 28 | 53 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG+C+yG+ C+FaHg Pav_sc0001181.1_g260.1.mk 28 FKTELCNKWQETGECPYGEHCQFAHG 53 79***********************8 PP | |||||||
2 | zf-CCCH | 21.3 | 4.7e-07 | 66 | 90 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H Pav_sc0001181.1_g260.1.mk 66 YKTEVCRMVLA-GvACPYGHRCHFRH 90 9**********.66**********88 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence |
MQQKVYVPAG GRKEQEPLEL EVYNQGMFKT ELCNKWQETG ECPYGEHCQF AHGIEELRPV 60 IRHPRYKTEV CRMVLAGVAC PYGHRCHFRH ALTENEKFMG PNKPRAMKLD R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 3e-53 | C3H family protein |