PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001141.1_g220.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family SRS
Protein Properties Length: 307aa    MW: 32186.1 Da    PI: 8.6156
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001141.1_g220.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702165.72.7e-511222674154
                     DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 
                                +  +C+dCGn+akk+C++ RCRtCC+ r +dC thvkstWvpaa+rrerq   + a           +  +      ++ ++  
  Pav_sc0001141.1_g220.1.mk 122 KMRACKDCGNKAKKGCEYGRCRTCCRGRRYDCFTHVKSTWVPAARRRERQMGVTVAVPGVVGGGGGGEGSSGS----SSVAKRP 201
                                5678*********************************************998888876665544322222222....2233333 PP

                     DUF702  88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                +  ++s++++ ++ ++slP++v+++avfrc rv+++ +g +elaYq++v+i+Ghvf+G+Lyd+G+++
  Pav_sc0001141.1_g220.1.mk 202 RVVVPSQNANANI-KQSLPDKVRAPAVFRCHRVTAIGNGAAELAYQATVKISGHVFQGLLYDHGVDK 267
                                3444455444444.456************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MLGLRDILLI APTPSSMHQL NQPISSDLSL PSSTTLGVGL GIFPLLTATP CAPHVPTTAD  60
GNSDGSHFWG LRRCQELNPS KQDLLNFGNH GAQNEQVVEC EGHNNNNENE GGGGGGGGES  120
SKMRACKDCG NKAKKGCEYG RCRTCCRGRR YDCFTHVKST WVPAARRRER QMGVTVAVPG  180
VVGGGGGGEG SSGSSSVAKR PRVVVPSQNA NANIKQSLPD KVRAPAVFRC HRVTAIGNGA  240
AELAYQATVK ISGHVFQGLL YDHGVDKNNA FPCISPSHLE TGTNQRNGDS ASTPPLPPST  300
ACLTSTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.13e-29SRS family protein