PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001105.1_g170.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 294aa    MW: 31586.5 Da    PI: 10.277
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001105.1_g170.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.9e-1671158186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                                +W++  + +Liea  e+  +l+rg+lk+++W+ev++++      ++  ++ +qCk++++ ++k+yk +k  +  +  +  s++p
  Pav_sc0001105.1_g170.1.mk  71 CWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVADVVssreDYGKTPKTDIQCKNRIDTVKKKYKLEKSKMAAG--GGPSKWP 152
                                7*************************************85444455566778********************997..67778** PP

                   trihelix  81 yfdqle 86 
                                +f++l+
  Pav_sc0001105.1_g170.1.mk 153 FFERLD 158
                                ****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MEEDDEIQSP ASGRSGSPES PRQNGRITVT VAVPSAQIPA PASQPQSKGL TLALPSQGQQ  60
GRSSGGGRED CWSEGATAVL IEAWGERYLE LSRGNLKQKH WKEVADVVSS REDYGKTPKT  120
DIQCKNRIDT VKKKYKLEKS KMAAGGGPSK WPFFERLDHL IGPSSAAKVG PGSGGSGGFL  180
AHNQKVPMGM PVGVRPGQYF GQRDPKREVK IRPRSLVDWD SDESGELSPF SVDNEVFERK  240
RRRRTVPPEA NVNNAGGVGK GGVGTKDGGV SREKGGGGWG SSKTLVISKC LFRM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239243RKRRR
2239245RKRRRRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-54Trihelix family protein