PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001081.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 152aa    MW: 17414.9 Da    PI: 6.7928
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001081.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC116.21.6e-369881897
                      NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
                               +helPlar+k+++k+d +vkm+s+e+Pvl+skacelfi+eltlrswlh+e +krrtl+++d a a+ + d   fl d+  
  Pav_sc0001081.1_g010.1.mk  9 HHELPLARVKRVMKSDGQVKMVSSETPVLFSKACELFIMELTLRSWLHTERSKRRTLQHCDTARAIMQDDLLHFLFDHTH 88
                               89***************************************************************************865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MYDTVAKPHH ELPLARVKRV MKSDGQVKMV SSETPVLFSK ACELFIMELT LRSWLHTERS  60
KRRTLQHCDT ARAIMQDDLL HFLFDHTHCH KEEEIGKISR NVDSGSTTGA LRVLETNQLG  120
GGLGEMDQVI QQYMIDPSMS SAELHRDYFE AK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.27e-33NF-YC family protein