PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001046.1_g270.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 380aa MW: 42535.4 Da PI: 5.1983

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001046.1_g270.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.5	5.6e-14	219	270	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++++k+L+ Pav_sc0001046.1_g270.1.mk 219 QRMTHIAVERNRRRQMNDHLNVLRSLMPTS---YIQRGDQASIVGGAIDFVKELE 270 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MERLQGPINP CFFGEHLDFQ CLEQGLSITT ETTLRFEEEE AAHLSIPSLE DRMPFLQMLQ 60 SVNSPPPYFP LKEPSFQALL RLQHLKNPWE LGKAYMPEME TQLQTALEIE SCVTHDMVEL 120 HSPVKSEAKD LHNHPHSVSA GNLEAVSSEC NQDQEQPNSA ENNCCRKGNN SSGSPPPTWA 180 QVQNEPEQSQ YPKSAPVTRE RRKRKRTRPT KNKEEVESQR MTHIAVERNR RRQMNDHLNV 240 LRSLMPTSYI QRGDQASIVG GAIDFVKELE QLLQSLEAQK RMRRADQGSN GDNSFSSSSS 300 SSSASMAMPS NGMFMSLSQC RIGSHEEGTT TTTLEDEVTA QNKSEAADID VTIEEGCKLG 360 SADEIARAVH QIFSFINGCS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MERLQGPINP CFFGEHLDFQ CLEQGLSITT ETTLRFEEEE AAHLSIPSLE DRMPFLQMLQ  60
SVNSPPPYFP LKEPSFQALL RLQHLKNPWE LGKAYMPEME TQLQTALEIE SCVTHDMVEL  120
HSPVKSEAKD LHNHPHSVSA GNLEAVSSEC NQDQEQPNSA ENNCCRKGNN SSGSPPPTWA  180
QVQNEPEQSQ YPKSAPVTRE RRKRKRTRPT KNKEEVESQR MTHIAVERNR RRQMNDHLNV  240
LRSLMPTSYI QRGDQASIVG GAIDFVKELE QLLQSLEAQK RMRRADQGSN GDNSFSSSSS  300
SSSASMAMPS NGMFMSLSQC RIGSHEEGTT TTTLEDEVTA QNKSEAADID VTIEEGCKLG  360
SADEIARAVH QIFSFINGCS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	206	RRKRKR
2	220	231	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	6e-42	bHLH family protein