PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001025.1_g140.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 509aa    MW: 57510.3 Da    PI: 7.7615
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001025.1_g140.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.39.9e-2966150187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW++qe+laL+++r++m+ ++r+++lk+plWe+vs+k+ e g+ rs+k+Ckek+en+ k+++++keg++++  ++ +t+++fd+
  Pav_sc0001025.1_g140.1.mk  66 RWPRQETLALLKIRSQMDAAFRDSSLKAPLWEDVSRKLGELGYYRSAKKCKEKFENVYKYHRRTKEGRSGK--QEGKTYRFFDE 147
                                8********************************************************************96..55557****** PP

                   trihelix  85 lea 87 
                                lea
  Pav_sc0001025.1_g140.1.mk 148 LEA 150
                                985 PP
2trihelix99.62.7e-31332416186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW++ ev aLi++r+ ++ r++++  k+ lWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+q
  Pav_sc0001025.1_g140.1.mk 332 RWPRVEVEALINLRTCLDVRYQEAGPKGSLWEEISAGMKRLGYNRSAKRCKEKWENINKYFKKVKESSKTR-PEDSKTCPYFNQ 414
                                8********************************************************************97.99********** PP

                   trihelix  85 le 86 
                                le
  Pav_sc0001025.1_g140.1.mk 415 LE 416
                                97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    
MPAVDVPVPD SSSTMLAAGS SSGEGVAGVV REGSHETTAV LSNSVQEDKD GRVDDPGDRN  60
LYGGNRWPRQ ETLALLKIRS QMDAAFRDSS LKAPLWEDVS RKLGELGYYR SAKKCKEKFE  120
NVYKYHRRTK EGRSGKQEGK TYRFFDELEA FDHQNNHPSV PPKPQVLLWP NNHHHPNNPT  180
VVSHVITSIV PLSSTPNMMA TTNGSPNGSH ISPPPINSLP PQVTKPVNLS HQNLNGFKPS  240
LATSNLFSSS TSSTASDEEF QVQQRHKKKR KWKYFFRRLT KEVNRTIPSR PQPLPVLTRP  300
PPPAPVAVIT TSFEVPRLDN GDNSIIPPGS TRWPRVEVEA LINLRTCLDV RYQEAGPKGS  360
LWEEISAGMK RLGYNRSAKR CKEKWENINK YFKKVKESSK TRPEDSKTCP YFNQLEVLYR  420
KKNMNNSSHV GYVEKPLPQE IQPLIKVHPD QPVVEAIERE NGNKNEEDED GESTEEEDHH  480
LDHSNDDDQD EQMGIVTNYK ESSMEMVES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-49Trihelix family protein