PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001025.1_g110.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 445aa MW: 51493.3 Da PI: 6.5806 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 87.4 | 1.6e-27 | 120 | 216 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 +Wt+q+v++Li+a+++++e+ ++++ +kk++W++vsk+m+ergf++sp+qC++k+++lnkrykk++++ +++ + Pav_sc0001025.1_g110.1.mk 120 KWTDQMVKLLITAVSYIGEDTSSDCgsggrrkystlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKKLNDMLGRGtS 203 7*********************99888899999999**********************************************66 PP trihelix 73 sessstcpyfdql 85 ++++++ +++d + Pav_sc0001025.1_g110.1.mk 204 CQVVENQALLDVI 216 9999998887765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence |
MEGHLSQGGM VPGGASYGGL DLEGSMRVQH QTQHPHTIHQ HHPHPRQGSL AHPSIHEGFP 60 LKMGTMHNCD QTISMMDYNK GERSKNSASD EDEPSYMEEG TDGHAEGNRG KKGSPWQRVK 120 WTDQMVKLLI TAVSYIGEDT SSDCGSGGRR KYSTLQKKGK WKSVSKVMAE RGFHVSPQQC 180 EDKFNDLNKR YKKLNDMLGR GTSCQVVENQ ALLDVIDYLT EKEKDDVRKI LSSKHLFYEE 240 MCSYHNGNRL HLPHDPALQK SLQRALRRDE HDNDDPRRHH HDDLDEDDQD METDEHEDFE 300 ENNASHGDNR GIYVLEDSVK RLRQGQGREE FNYGSSLNPQ DCNKSSYCHP PIPQADMNQV 360 LPDGTKAAWL QKQWIESRSL QLEEQKLQIQ VEMLELEKQR FKWQRFSKKR DRELEKLRME 420 NERMKLENER MALELKRKEM GAGFS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-170 | Trihelix family protein |