PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001020.1_g210.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 541aa MW: 61316.9 Da PI: 7.666

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001020.1_g210.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.3	4.5e-12	404	429	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Pav_sc0001020.1_g210.1.mk 404 YQPDICKDYKETGYCGYGDSCKFMHD 429 66789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MVEAPRDRGV SFPIVFSDGE TETDIGNVVV NDALEFKLFL SLLSNKIGIS PHQFTVFLSS 60 PDTRRRIPIT GKVNFGAISR EKNCFFLVEL KRSRREKRRS KNSQIQHHHH QDFQENEYDN 120 TASFGAHNPV NKSLSLENVM LLRRGMEIEN VTGLGFPFAG RVEYENRIRE LQMEKERYLM 180 NMGLGRSDGL GLGLGRGGGV AVVCEECSRA KAMGREVGFH WCAYDAVTFG FRSPAVCNFF 240 RKPLKKQNIR KRRVDEDEEE EDSKSGGTSL PSQRKASKLD GKLYFSSGLS KSSTPDSSAI 300 FEFKSSKEIQ VEHDSKATAT LETETEFSRD ARAVRERVLK LAEEDLKGKS KGSGDEKLYK 360 GIHGYTDYKA GFRRELTVAS EKAGGSHGPL RASAHIRATT RFDYQPDICK DYKETGYCGY 420 GDSCKFMHDR GDYKSGWQME REWDEAEKIR KRNLALGEDD VDQTEEDDVD DDEDGSLPFA 480 CFICRQPFVD PVVTKCNHYF CEHCALKHHS KNKKCFVCDK PTLGIFNTAH EIRRRMAAEG 540 K

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MVEAPRDRGV SFPIVFSDGE TETDIGNVVV NDALEFKLFL SLLSNKIGIS PHQFTVFLSS  60
PDTRRRIPIT GKVNFGAISR EKNCFFLVEL KRSRREKRRS KNSQIQHHHH QDFQENEYDN  120
TASFGAHNPV NKSLSLENVM LLRRGMEIEN VTGLGFPFAG RVEYENRIRE LQMEKERYLM  180
NMGLGRSDGL GLGLGRGGGV AVVCEECSRA KAMGREVGFH WCAYDAVTFG FRSPAVCNFF  240
RKPLKKQNIR KRRVDEDEEE EDSKSGGTSL PSQRKASKLD GKLYFSSGLS KSSTPDSSAI  300
FEFKSSKEIQ VEHDSKATAT LETETEFSRD ARAVRERVLK LAEEDLKGKS KGSGDEKLYK  360
GIHGYTDYKA GFRRELTVAS EKAGGSHGPL RASAHIRATT RFDYQPDICK DYKETGYCGY  420
GDSCKFMHDR GDYKSGWQME REWDEAEKIR KRNLALGEDD VDQTEEDDVD DDEDGSLPFA  480
CFICRQPFVD PVVTKCNHYF CEHCALKHHS KNKKCFVCDK PTLGIFNTAH EIRRRMAAEG  540
K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-155	C3H family protein