PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000983.1_g520.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HSF

Protein Properties

Length: 380aa MW: 43001.9 Da PI: 5.2441

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000983.1_g520.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99.3	3.6e-31	44	156	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........... CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........... 74 Fl+k++++++d+++++++sws+ g sfvv+d+++f ++Lp+yFkh+nf+SFvRQLn+Y + + ++ s Pav_sc0000983.1_g520.1.mk 44 FLTKTFDMVDDPSTNRIVSWSRGGGSFVVWDPHTFVMNLLPRYFKHNNFSSFVRQLNTYVSVFTPKLKSLIGSgisddctgfrk 127 9********************************************************8666666665544466788777665 PP .XTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 .kekiweFkhksFkkgkkellekikrkks 102 +++ weF+++ F +g+k+ll++ikr+k+ Pav_sc0000983.1_g520.1.mk 128 vDPDRWEFANEGFVRGQKHLLKNIKRRKT 156 449**********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MNYLYPVKEE FPGSSSSQSG PGDPVVMIPP QPMEGLNDTG PPPFLTKTFD MVDDPSTNRI 60 VSWSRGGGSF VVWDPHTFVM NLLPRYFKHN NFSSFVRQLN TYVSVFTPKL KSLIGSGISD 120 DCTGFRKVDP DRWEFANEGF VRGQKHLLKN IKRRKTPSQP LPAQQALGPC VEVGQFGLDG 180 EIDRLRRDKQ VLMMELVKLR QQQQNTRAYL QAMEQRLQGT EMKQQQMMAF LARAMQNPAF 240 MQQLVQQKDK RKELEEAMTK KRRRPIDQGP SGVGGGKSTL KGKGTNLIKC EPLEFGDCDY 300 EMSELEALAL EIQGFGKARK EQDEELEPLQ SGKELDEGFW EELFSERFEG DFSIPSAIEG 360 EDEDVIILAD RLGYLGSCPK

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MNYLYPVKEE FPGSSSSQSG PGDPVVMIPP QPMEGLNDTG PPPFLTKTFD MVDDPSTNRI  60
VSWSRGGGSF VVWDPHTFVM NLLPRYFKHN NFSSFVRQLN TYVSVFTPKL KSLIGSGISD  120
DCTGFRKVDP DRWEFANEGF VRGQKHLLKN IKRRKTPSQP LPAQQALGPC VEVGQFGLDG  180
EIDRLRRDKQ VLMMELVKLR QQQQNTRAYL QAMEQRLQGT EMKQQQMMAF LARAMQNPAF  240
MQQLVQQKDK RKELEEAMTK KRRRPIDQGP SGVGGGKSTL KGKGTNLIKC EPLEFGDCDY  300
EMSELEALAL EIQGFGKARK EQDEELEPLQ SGKELDEGFW EELFSERFEG DFSIPSAIEG  360
EDEDVIILAD RLGYLGSCPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	154	LKNIKRR
2	250	264	KRKELEEAMTKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-123	HSF family protein