PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000983.1_g510.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 355aa    MW: 38850.5 Da    PI: 9.005
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000983.1_g510.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.2e-064668123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C++C+k F r  nL+ H r H
  Pav_sc0000983.1_g510.1.mk 46 FVCEICNKGFQRDQNLQLHRRGH 68
                               89*******************88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MNIYLCVSVL LPPVVSAYYT TSTQPTKSKR KEVSLETQTL LATNRFVCEI CNKGFQRDQN  60
LQLHRRGHNL PWKLKQRNNK DQIRKRAYVC PEPSCVHHHP SRALESAKLS ASQLAAATTT  120
TNPNIMTPQI SLFPFPNSPP PFTTISLTPW DPPHHQNPNP NLNHHLIKTE SHHHNHFPTT  180
QPHKGLMTSP FQNLHVSTHP SSKPATSSAH LSATALLQKA ATVGSSSSAA ASAGQQAQSA  240
GLTVGEFETA SHMNMISTDY LGGFTSGDLT TWQKTDRLTR DFLGLTGDGT GNHNVGAVNV  300
VKDMLTYAGG VEFQQQQQHP YDQPLRGHNN SLLLKPQGFG FAETTGAASE TWGDC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.14e-37C2H2 family protein