PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000977.1_g060.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 310aa MW: 35081 Da PI: 8.7331

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000977.1_g060.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	152	171	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Pav_sc0000977.1_g060.1.mk 152 FACSICSKTFNRYNNMQMHM 171 78*****************9 PP
2	zf-C2H2	11.5	0.00092	236	258	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k+F k + ++H +++ Pav_sc0000977.1_g060.1.mk 236 FMCRKCAKTFAVKGDWRTHEKNC 258 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MGLWNHHVEG QNLCFQAPPF IEWLKPPSSF SSSSSPSFCL SENSTTMQCL PLLSRFTDSK 60 PVKIEDVGVQ KEGFGVKEEK MGQVTVALRI GLPNSTSEAD QSDTHHENKK VLDLKEEEGV 120 AMRKSFRGCS FNAESRFWIP TPAQILVGPM QFACSICSKT FNRYNNMQMH MWGHGSEFRK 180 GPDSLKGTQP AAMLRLPCYC CAQGCKNNIN HPRAKPLKDF RTLQTHYKRK HGAKPFMCRK 240 CAKTFAVKGD WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI RSFGKGHSPH PSLDGFHEDE 300 KECITGSEDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-123	C2H2 family protein