PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000976.1_g230.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 491aa MW: 53378.9 Da PI: 8.3309

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000976.1_g230.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.8	9e-16	105	197	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsess 76 +W++ + +L+ea +e+ ++l+rg+l++ +Weev++ + + ++ +qCk+k++nl+kryk + ++ + Pav_sc0000976.1_g230.1.mk 105 EWSDTAIACLLEAFTEKFNQLNRGNLRGRDWEEVAEMVsercgtggGNKSTYKTVEQCKNKIDNLKKRYKVELQRITSS-GLGA 187 5***********************************999999998888999*************999998884.7888 PP trihelix 77 stcpyfdqle 86 s++ +f++le Pav_sc0000976.1_g230.1.mk 188 SHWHWFKKLE 197 89***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MASSDDFSLI DSSSHLHAPP RPRDTIDSTT TANNGDFFPR PFPDDPDRSP NPTRTPNTKR 60 SSYYYKKLKP SSANPNPTTS TTEAESSSGP ETASQRGDYR KDREEWSDTA IACLLEAFTE 120 KFNQLNRGNL RGRDWEEVAE MVSERCGTGG GNKSTYKTVE QCKNKIDNLK KRYKVELQRI 180 TSSGLGASHW HWFKKLEVIL GSSLVPKGGG GSDEERSSGR ANSNVAKQPK RYTPGSTGFT 240 NNLKSKSMPN VKWKRVMLKI SGAALAGDCQ SIDPKVATQI AEEVARACRL GVEVAIVVGG 300 CNFFCGDTWV SSTGLDRSTA YQIGMMATVM NSVLLQSALE KVGVQARVQT ALTMPEVSEP 360 YNRLRAIRHL EKGRVVIFGG IGAGTGNYLF TTDIAAALRA SELNAEAVLK GTNFNGIYEC 420 HSGSNSVTVD HTCYREVVSR GITSVDVMAL TYCEENGIPV VIFNLLEPGN ISRALCGDQV 480 GTLIDQAGRI S

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MASSDDFSLI DSSSHLHAPP RPRDTIDSTT TANNGDFFPR PFPDDPDRSP NPTRTPNTKR  60
SSYYYKKLKP SSANPNPTTS TTEAESSSGP ETASQRGDYR KDREEWSDTA IACLLEAFTE  120
KFNQLNRGNL RGRDWEEVAE MVSERCGTGG GNKSTYKTVE QCKNKIDNLK KRYKVELQRI  180
TSSGLGASHW HWFKKLEVIL GSSLVPKGGG GSDEERSSGR ANSNVAKQPK RYTPGSTGFT  240
NNLKSKSMPN VKWKRVMLKI SGAALAGDCQ SIDPKVATQI AEEVARACRL GVEVAIVVGG  300
CNFFCGDTWV SSTGLDRSTA YQIGMMATVM NSVLLQSALE KVGVQARVQT ALTMPEVSEP  360
YNRLRAIRHL EKGRVVIFGG IGAGTGNYLF TTDIAAALRA SELNAEAVLK GTNFNGIYEC  420
HSGSNSVTVD HTCYREVVSR GITSVDVMAL TYCEENGIPV VIFNLLEPGN ISRALCGDQV  480
GTLIDQAGRI S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	1e-176	Trihelix family protein