PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000909.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 273aa    MW: 28916.7 Da    PI: 9.0255
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000909.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-0876101227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                kt+lC+ +     Ck+Gd+C+FaHg+
  Pav_sc0000909.1_g010.1.mk  76 KTRLCNKYNTVEGCKFGDKCHFAHGE 101
                                8*********99************96 PP
2zf-CCCH36.58.3e-12240265127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +kt+lC +f + GtC +GdrC+FaHgp
  Pav_sc0000909.1_g010.1.mk 240 FKTKLCENFTK-GTCTFGDRCHFAHGP 265
                                69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MESFTTGIGS KSKPCTKFFS TSGCPFGEGC HFLHYVPGGI KAVSQMTGSN PTLPPPPRNS  60
AAPPSFPDGS SPPSVKTRLC NKYNTVEGCK FGDKCHFAHG EWELGRPTAQ SYEDPRGGGG  120
YPGRMGGGRM EPPPQTHGAA ARFGATATAK ISVDASLAGA IIGKNGVNSK QICRVTGAKL  180
SIREHESDPK LRNIELEGTF DQIKDASAMV RELIVNVSSA AGPHMRNNPG MAASAPASNF  240
KTKLCENFTK GTCTFGDRCH FAHGPEELRR QGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-53C3H family protein