PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000893.1_g950.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 469aa MW: 52407.6 Da PI: 8.5043

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000893.1_g950.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.5e-06	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Pav_sc0000893.1_g950.1.mk 58 YVCEICNQGFQRDQNLQMHRRRH 80 9*********************9 PP
2	zf-C2H2	15.4	5.5e-05	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Pav_sc0000893.1_g950.1.mk 138 WVCDKCSKGYAVQSDYKAHLKTC 160 58*******************98 PP
3	zf-C2H2	10.9	0.0015	168	186	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ Pav_sc0000893.1_g950.1.mk 168 DCGRVFSRVESFIEHQDTC 186 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MLDNHTASSS AAPSSSSHDA LENGGATHKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC 60 EICNQGFQRD QNLQMHRRRH KVPWKLLKRE IAQDQVIKKR VFVCPEPSCL HHDPCHALGD 120 LVGIKKHFRR KHSNHKQWVC DKCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI 180 EHQDTCTVRH VVRPEFQVAL QPACSSRTAS STSPSSDTNF SINNNNNNNV PQALPGLPMR 240 PNPTHHHDHQ RAHALNNPHS SCNQQQQQQQ QQVHNNNILE LQLLPSSNTR TISPPNLDEN 300 HATHLKLSIG SSSCDQRGDE KKDQTRQPSS SGIRRSCSNA EKMDGAGRTL EVARLKEFAS 360 EELKLAMAEK AYAEDARREA KRQIEMAELE FANAKRMRQQ ALAEMEKAQF LKEQAMKKIS 420 SAILQITCQA CKQHFHASAT TAVGPSDETS LAMSYMSSAT TEGEGDHDQ

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MLDNHTASSS AAPSSSSHDA LENGGATHKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC  60
EICNQGFQRD QNLQMHRRRH KVPWKLLKRE IAQDQVIKKR VFVCPEPSCL HHDPCHALGD  120
LVGIKKHFRR KHSNHKQWVC DKCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI  180
EHQDTCTVRH VVRPEFQVAL QPACSSRTAS STSPSSDTNF SINNNNNNNV PQALPGLPMR  240
PNPTHHHDHQ RAHALNNPHS SCNQQQQQQQ QQVHNNNILE LQLLPSSNTR TISPPNLDEN  300
HATHLKLSIG SSSCDQRGDE KKDQTRQPSS SGIRRSCSNA EKMDGAGRTL EVARLKEFAS  360
EELKLAMAEK AYAEDARREA KRQIEMAELE FANAKRMRQQ ALAEMEKAQF LKEQAMKKIS  420
SAILQITCQA CKQHFHASAT TAVGPSDETS LAMSYMSSAT TEGEGDHDQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	34	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-154	C2H2 family protein