PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000890.1_g640.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 768aa MW: 84606.9 Da PI: 7.7042

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000890.1_g640.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89	4.4e-28	238	291	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl Pav_sc0000890.1_g640.1.mk 238 KPRVVWSLELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 291 79*****************.******************************8 PP
2	Myb_DNA-binding	38.7	2.4e-12	240	290	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e++ ++v av+qlG + +k+I m+ +++t++++ s++qky+ Pav_sc0000890.1_g640.1.mk 240 RVVWSLELHRKFVAAVNQLGIDkaVPKKILDLMNvEKLTRENVASHLQKYR 290 678******************************99***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MTVEGVLDEP RDQFPIGMRV LAVDDDPICL KLLDALLRRC KYHVLSANGD TKLVMKGITH 60 GACDYLLKPV RIEQLKNIWQ HVIRRKKVDS KDQNSCNKEK SHAGNGEGGP GSAGTGNSDQ 120 NAKLNKKLLS ANGDTKLVMK GITHGACDYL LKPVRIEQLK NIWQHVIRRK KVDSKDQNSC 180 NQEKSHAGNG EGGPGSAGTG NSDQNAKLNK KRKDQDEDED DDRDEDGHDN DDPSTQKKPR 240 VVWSLELHRK FVAAVNQLGI DKAVPKKILD LMNVEKLTRE NVASHLQKYR LYLKRISRVA 300 NQQANMVAAL GTSDSSYLRM TSMNGVGNFH PLTGPGQFHN NAFRSFPPSG MVGRLNTPAG 360 LGLHCLPSSG MFQLSHAQNT SNSINDQPLI FPGNRNGNIL PAPLELDQQH GTEAACVADF 420 SAAVNGTTVY PTSSGLPDAK VLNDNWSSAS QPSMFRSNSF SSRDSFKQPT LLQSNLKDNM 480 PVMSSQIGSP QIDVSISCQS QDSRFGLPIQ ASAISNNSEQ TINNDPFQGW DDHKQLLQSN 540 LKDNMPVMSS QIGSPQIDVS ISCQSQDSRF GLPIQASAIS NNSGQTINND PFQGWDDHKP 600 DSQYPSDVIC TSMNSLMPVN DTMAPFDQNS DSRTTTFQRN MDFNSIGQSN FLDPLLMKYD 660 DIELSTQDAS LKMRPGYLMD QRKLQGGYNP NNVGSLDELV SAMMKQFCAS ISNTSGDLLR 720 RNSPCRVLKG DKAKSMAGKV QRPCREKREE ISLTFTPLVS EHLSTYLH

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MTVEGVLDEP RDQFPIGMRV LAVDDDPICL KLLDALLRRC KYHVLSANGD TKLVMKGITH  60
GACDYLLKPV RIEQLKNIWQ HVIRRKKVDS KDQNSCNKEK SHAGNGEGGP GSAGTGNSDQ  120
NAKLNKKLLS ANGDTKLVMK GITHGACDYL LKPVRIEQLK NIWQHVIRRK KVDSKDQNSC  180
NQEKSHAGNG EGGPGSAGTG NSDQNAKLNK KRKDQDEDED DDRDEDGHDN DDPSTQKKPR  240
VVWSLELHRK FVAAVNQLGI DKAVPKKILD LMNVEKLTRE NVASHLQKYR LYLKRISRVA  300
NQQANMVAAL GTSDSSYLRM TSMNGVGNFH PLTGPGQFHN NAFRSFPPSG MVGRLNTPAG  360
LGLHCLPSSG MFQLSHAQNT SNSINDQPLI FPGNRNGNIL PAPLELDQQH GTEAACVADF  420
SAAVNGTTVY PTSSGLPDAK VLNDNWSSAS QPSMFRSNSF SSRDSFKQPT LLQSNLKDNM  480
PVMSSQIGSP QIDVSISCQS QDSRFGLPIQ ASAISNNSEQ TINNDPFQGW DDHKQLLQSN  540
LKDNMPVMSS QIGSPQIDVS ISCQSQDSRF GLPIQASAIS NNSGQTINND PFQGWDDHKP  600
DSQYPSDVIC TSMNSLMPVN DTMAPFDQNS DSRTTTFQRN MDFNSIGQSN FLDPLLMKYD  660
DIELSTQDAS LKMRPGYLMD QRKLQGGYNP NNVGSLDELV SAMMKQFCAS ISNTSGDLLR  720
RNSPCRVLKG DKAKSMAGKV QRPCREKREE ISLTFTPLVS EHLSTYLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	290	299	RLYLKRISRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	6e-89	ARR-B family protein