PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000877.1_g900.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 627aa MW: 71233 Da PI: 6.6284

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000877.1_g900.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.4	7.9e-23	280	323	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+ Pav_sc0000877.1_g900.1.mk 280 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 323 67999*************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
MTIPQTRNFG LPLMNLIRLK GIPILQQLHL EEQLLRTSSE NWCIMNDGTN DPTIVMGISG 60 KPAELLEIDL VLRDQIPVIR RFTGGGTVTV DHNTVFVTFI CNTDAVAGLQ PYPRPIMYWS 120 SLLYSRVFEG RGDFQLREND YVFGNRKFGG NAQSITKTRW IHHTSFLWDY EVRNMAYLRL 180 PKRIPEYRLA RDHLEFICCL KDYIPRSVFL DKTVDALRTQ FSVRSEQLDA FEATSNTKFV 240 PSTRLLTRQE LEEAAFGSHA ESTLSQSLSL MGRVKLKIKK LESSGNRQVT FSKRRNGILK 300 KAKELSILCD VDIVLLMFSP TGRPTLLQGE RSNVEEIISK FAQLTPQERA KRKLESLEAL 360 KKTFKKLDHD VNVQEFMSSS TQTVQDLTTQ VRVLQAQLTE IHKRLSFWCN PDNVDNLEHL 420 SQMEDILKES INRTRLHKFQ NGMPSSLLVG GMPEAQPLTW LLNNDNQHMI LPNESNYLPH 480 RDVDVECSTN ASVPQYTSYF GTCASTSTGK QSEVGDPLQL DNMGQIPNME GGGGLNEFDI 540 NACLSTEPGQ QYMYPSYCSS NVDDKTSKPQ MEMNLPTNPV GYQVSSDFEL PRSMYDNEHH 600 AWLSSTGPSG IAVYKENTYQ QQPNMGL

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

MTIPQTRNFG LPLMNLIRLK GIPILQQLHL EEQLLRTSSE NWCIMNDGTN DPTIVMGISG  60
KPAELLEIDL VLRDQIPVIR RFTGGGTVTV DHNTVFVTFI CNTDAVAGLQ PYPRPIMYWS  120
SLLYSRVFEG RGDFQLREND YVFGNRKFGG NAQSITKTRW IHHTSFLWDY EVRNMAYLRL  180
PKRIPEYRLA RDHLEFICCL KDYIPRSVFL DKTVDALRTQ FSVRSEQLDA FEATSNTKFV  240
PSTRLLTRQE LEEAAFGSHA ESTLSQSLSL MGRVKLKIKK LESSGNRQVT FSKRRNGILK  300
KAKELSILCD VDIVLLMFSP TGRPTLLQGE RSNVEEIISK FAQLTPQERA KRKLESLEAL  360
KKTFKKLDHD VNVQEFMSSS TQTVQDLTTQ VRVLQAQLTE IHKRLSFWCN PDNVDNLEHL  420
SQMEDILKES INRTRLHKFQ NGMPSSLLVG GMPEAQPLTW LLNNDNQHMI LPNESNYLPH  480
RDVDVECSTN ASVPQYTSYF GTCASTSTGK QSEVGDPLQL DNMGQIPNME GGGGLNEFDI  540
NACLSTEPGQ QYMYPSYCSS NVDDKTSKPQ MEMNLPTNPV GYQVSSDFEL PRSMYDNEHH  600
AWLSSTGPSG IAVYKENTYQ QQPNMGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	3e-92	M-type_MADS family protein