PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000877.1_g790.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 339aa MW: 39134.1 Da PI: 4.8359

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000877.1_g790.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.9	1.5e-26	169	219	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk++sl Pav_sc0000877.1_g790.1.mk 169 SKMLSRETISNYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLASL 219 57899*******************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MGGHSLMSWL ANYDVVEDPF CFTNQIVPPM DYLSGMNGYD PFDWQYEWTL PLVQDSFLDA 60 AVPFMDQSCL NLDPLYSSLD IQPIRSVFQG DEIVLGNGNG VCNDLFGELM EPSNKKKKQI 120 QHQPPLLMCK NEENGSAEND LEDERKLTSK RSHLSTRLRS SNSMSLNSSK MLSRETISNY 180 FYMPITQAAK ELNVGLTLLK KRCRELGIRR WPHRKLASLQ TLIRNIQELG NEGEESKEKL 240 RNAIELLERE RKLLEEVPDM QLEDHTKRLR QACFKANYKK RKIMEMNNMD QSQSSFICSN 300 NEIHEYASTM DDDHEEDEEI KSLLSDSFSS SNTNNTCLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	119	PSNKKKKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-45	Nin-like family protein