PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000872.1_g190.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 1056aa MW: 115845 Da PI: 6.8775

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000872.1_g190.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l ++v+++G g+W+++ r g++R++k+c++rw ++l Pav_sc0000872.1_g190.1.mk 39 KGPWTAAEDQILMEYVRKHGEGNWNAVQRNSGLNRCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	46.7	7.4e-15	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g ++ eE+ +++++++++G++ W++ a+ ++ gRt++++k++w++ Pav_sc0000872.1_g190.1.mk 92 KGVFSREEERRILELHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 135 689*****************.*****.*********96 PP
3	Myb_DNA-binding	43.9	5.4e-14	574	621	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l ++v+++G g+W+ + r g++R++k+ ++rw ++l Pav_sc0000872.1_g190.1.mk 574 KGPWTAAEDQILMEYVRKHGEGNWNEVQRNSGLNRCGKSGRLRWANHL 621 79******************************************9986 PP
4	Myb_DNA-binding	46.6	7.7e-15	627	670	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+++ eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++ Pav_sc0000872.1_g190.1.mk 627 KGSFSLEEQRLILELHAKYGNK-WARMASQLP-GRTDNEIKNHWNT 670 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence
MTTNNGSIWE LHSEGMLPPE SGGGGGGGHV VEGSDGLKKG PWTAAEDQIL MEYVRKHGEG 60 NWNAVQRNSG LNRCGKSCRL RWANHLRPNL KKGVFSREEE RRILELHAKY GNKWARMASQ 120 LPGRTDNEIK NYWNTRVKRR QRQCLPLYPH DIKQSHSQAT SLTIPSLAPL TTTIQNPFQP 180 ITNGSTPTFS FQTQSPTQSH HLLQLSPTPP SLSPLSSPHQ TKPTTLTSFP PFDPINTITS 240 SFSSSSTPSL TFHRPAPILG APLRHKRCRD SIRFSPPLSP NLKRNTSMFR TSSMPEIASF 300 QLTGSNSMPA IASLTRTYSM SDNPSFEFPM TFDHSFPPLP RSQFDFSNNF LSPAGSVYSV 360 QSELPSNQVS QTQLEISIDN NLSSAAGAAL AAAADETHSR SGLLDDLLQE ADALEAYGGG 420 NNSRTTNGIL GSFEEKHVLD GYDQWLQSTS SVDGHLNSLH KDLSKLFGSI PSSESVSDLY 480 SDSGEVSNAH SSGITDANLD MQQMGSMFPT DATAEHGRAS SFWEEEQLSY HMDMNKVLMT 540 HVSVLPSQGM FPLGSSGSGG GGGYVVEGND CLKKGPWTAA EDQILMEYVR KHGEGNWNEV 600 QRNSGLNRCG KSGRLRWANH LRPNLKKGSF SLEEQRLILE LHAKYGNKWA RMASQLPGRT 660 DNEIKNHWNT RVKRRKRQGL PLYPHDIKQS QQSHFHSQTI PSLTPLTTII QNPFQPITDG 720 STPTFSFHTQ SQTQAHHLPP LSPTPPSLSP LSSPHRPKPT ALTPFPHFDP INSPSSSSFS 780 SSTPSFTFHR PAPILGAPLR HKMFRDSIGF SPPLSPNPER NTSMFRTSSM PDIASFQLTG 840 SDSMPDMASF QMTSTNSMSD IACFEFPRTF NHSFPPLSLS QFDFSDSLVS PTGPVYSVQS 900 ELSSNQVSQT QLKISIDNNA SLRDAITLAA TDETHCNISL LDEFLQEACS GGNNSRSATE 960 LLGSFEEKHV LDGYGQWLKS TSSIDGHLNS MPEDFSKLSN SIPPSEPVSN WYSDSGEVSN 1020 AHSSGLTDAS LEFEMQQMAS MFPDVATAGH GMASSS

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence

MTTNNGSIWE LHSEGMLPPE SGGGGGGGHV VEGSDGLKKG PWTAAEDQIL MEYVRKHGEG  60
NWNAVQRNSG LNRCGKSCRL RWANHLRPNL KKGVFSREEE RRILELHAKY GNKWARMASQ  120
LPGRTDNEIK NYWNTRVKRR QRQCLPLYPH DIKQSHSQAT SLTIPSLAPL TTTIQNPFQP  180
ITNGSTPTFS FQTQSPTQSH HLLQLSPTPP SLSPLSSPHQ TKPTTLTSFP PFDPINTITS  240
SFSSSSTPSL TFHRPAPILG APLRHKRCRD SIRFSPPLSP NLKRNTSMFR TSSMPEIASF  300
QLTGSNSMPA IASLTRTYSM SDNPSFEFPM TFDHSFPPLP RSQFDFSNNF LSPAGSVYSV  360
QSELPSNQVS QTQLEISIDN NLSSAAGAAL AAAADETHSR SGLLDDLLQE ADALEAYGGG  420
NNSRTTNGIL GSFEEKHVLD GYDQWLQSTS SVDGHLNSLH KDLSKLFGSI PSSESVSDLY  480
SDSGEVSNAH SSGITDANLD MQQMGSMFPT DATAEHGRAS SFWEEEQLSY HMDMNKVLMT  540
HVSVLPSQGM FPLGSSGSGG GGGYVVEGND CLKKGPWTAA EDQILMEYVR KHGEGNWNEV  600
QRNSGLNRCG KSGRLRWANH LRPNLKKGSF SLEEQRLILE LHAKYGNKWA RMASQLPGRT  660
DNEIKNHWNT RVKRRKRQGL PLYPHDIKQS QQSHFHSQTI PSLTPLTTII QNPFQPITDG  720
STPTFSFHTQ SQTQAHHLPP LSPTPPSLSP LSSPHRPKPT ALTPFPHFDP INSPSSSSFS  780
SSTPSFTFHR PAPILGAPLR HKMFRDSIGF SPPLSPNPER NTSMFRTSSM PDIASFQLTG  840
SDSMPDMASF QMTSTNSMSD IACFEFPRTF NHSFPPLSLS QFDFSDSLVS PTGPVYSVQS  900
ELSSNQVSQT QLKISIDNNA SLRDAITLAA TDETHCNISL LDEFLQEACS GGNNSRSATE  960
LLGSFEEKHV LDGYGQWLKS TSSIDGHLNS MPEDFSKLSN SIPPSEPVSN WYSDSGEVSN  1020
AHSSGLTDAS LEFEMQQMAS MFPDVATAGH GMASSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	4e-64	MYB family protein