PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000852.1_g550.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WOX
Protein Properties Length: 245aa    MW: 27443 Da    PI: 10.2339
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000852.1_g550.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.41.9e-2191150357
                                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Pav_sc0000852.1_g550.1.mk  91 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 150
                                7*****************99**************************************97 PP
2Wus_type_Homeobox118.23.6e-3891152465
          Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq
  Pav_sc0000852.1_g550.1.mk  91 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 152
                                8***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MGISSMKVHQ FARGLWEHEP SLTLGCTKRL RPLAPKLANT TASDTTTTAL APFDLKSFIR  60
PESGPRKLGS SDHQEKKDSP HPQVETHPGG TRWNPTQEQI GILEMLYRGG MRTPNAQQIE  120
QITAQLGKYG KIEGKNVFYW FQNHKARERQ KQKRNSLGLS HSPRTPTPVI TNLGEVVGER  180
EEDSPYKRKC RSWGFDCSVE DSVVCKADEV VEGGREFKKG PGLSKSQTSK KKANIGQQDA  240
RVFQT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-67WOX family protein