PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000845.1_g190.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 336aa    MW: 37432.8 Da    PI: 6.7228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000845.1_g190.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-0959106354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                  +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+iL  +++ +k+L
  Pav_sc0000845.1_g190.1.mk  59 IQKADREKLRRDRLNDQFLELGNVLDPD----RPKNDKATILADTIQVLKDL 106
                                56789*******************9997....79***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MDQQLKHEGF IQSAPPPFPS AIEFPQPPPD SRVPSGRSQP NSSQRPEGET KDCLTARKIQ  60
KADREKLRRD RLNDQFLELG NVLDPDRPKN DKATILADTI QVLKDLTSEV DKLKADCASL  120
TEESRELTHE KNDLREEKAS LKSDIENLNA QYQQRLRAMF PWGAMDHSVV MAPPSYPYPM  180
PMPMPPGPIP MHPHMQPYHY FPNQNPGIIP NPCSTFVPYV TPNTLVEQQS TQYVSPVVHP  240
GSRSHVSGKQ DSRNKLSGES KIDRSEDSND VTTELELKTP GSMTDQDLSS VRRKSQKSAR  300
KEIKVTEGSS SSRCSSSRSV QDSSSNSVVG GTKADD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.25e-87bHLH family protein