PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000843.1_g260.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 385aa MW: 43211 Da PI: 6.4398

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000843.1_g260.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.6	3.3e-18	194	242	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k++e+k +r+vtfskR+ g++ KA ELSvL +ae a i++ss+gk++ + Pav_sc0000843.1_g260.1.mk 194 KKVEEKNKRHVTFSKRKRGLFNKAAELSVLSGAETAGIVVSSNGKVFCF 242 57899****************************************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MAKRGADESE ITNDDNINGK RQRTDPTMAK MGADESEITN DDNINGKRQI TDPTMAKMGA 60 AESEITNDDN INGKRQRTDP TVAKMGGDES EITNDDNING KRQITDPTMA KMGAAESENT 120 NDDNINGKRQ ITDPTMAKMG APESEVTNDD NINGKRPRTD PTMAKRGAAE IEITNDNNIN 180 GKRPSKRQRR VEIKKVEEKN KRHVTFSKRK RGLFNKAAEL SVLSGAETAG IVVSSNGKVF 240 CFGSPSADTV IHRYLGHNAS SLLHAGQPDI HHVNGEVRYC PYNISSHVNI MRNGNKQVED 300 YMEARRHMEV EKIKRVKNNN SDNIDDIDNN IDGERGGWCY RWWEKPIEMT TSLEELEEYM 360 AALRQLKHNV EVRTNQMVMN VGYNC

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MAKRGADESE ITNDDNINGK RQRTDPTMAK MGADESEITN DDNINGKRQI TDPTMAKMGA  60
AESEITNDDN INGKRQRTDP TVAKMGGDES EITNDDNING KRQITDPTMA KMGAAESENT  120
NDDNINGKRQ ITDPTMAKMG APESEVTNDD NINGKRPRTD PTMAKRGAAE IEITNDNNIN  180
GKRPSKRQRR VEIKKVEEKN KRHVTFSKRK RGLFNKAAEL SVLSGAETAG IVVSSNGKVF  240
CFGSPSADTV IHRYLGHNAS SLLHAGQPDI HHVNGEVRYC PYNISSHVNI MRNGNKQVED  300
YMEARRHMEV EKIKRVKNNN SDNIDDIDNN IDGERGGWCY RWWEKPIEMT TSLEELEEYM  360
AALRQLKHNV EVRTNQMVMN VGYNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	6e-20	M-type_MADS family protein