PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000800.1_g680.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92271.6 Da    PI: 6.2135
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000800.1_g680.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-192179357
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pav_sc0000800.1_g680.1.mk 21 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79
                               5679*****************************************************97 PP
2START184.27.2e-581653732205
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+
  Pav_sc0000800.1_g680.1.mk 165 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRNCRSVDVLNVL 247
                                7899******************************************************.8888888888*************** PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163
                                s+g  g+++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s 
  Pav_sc0000800.1_g680.1.mk 248 STGngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSI 331
                                ******************************************************9988899*********************** PP

                                EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                      START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                +++v+h+dl+ ++++++lr+l++s++  ++kt++a+l+++++
  Pav_sc0000800.1_g680.1.mk 332 IHIVDHMDLEPWSVPEVLRPLYESSTLLAQKTTMAALRNLRQ 373
                                **************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MMAVTSACKD GGMKMQMDNG KYVRYTPEQV EALERLYHEC PKPSSMRRQQ LIRECPILSN  60
IEPKQIKVWF QNRRCREKQR KEASRLQTVN RKLTAMNKLL MEENDRLQKQ VSQLVYENSY  120
FRQQTQNTNL ATTDTSCESV VTSGQHHLTP QHPPRDASPA GLLSIAEETL AEFLSKATGT  180
AVEWVQMPGM KPGPDSIGIV AISHGCTGVA ARACGLVGLE PTRVAEILKD RPSWFRNCRS  240
VDVLNVLSTG NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SVLEDGSLVV CERSLNNTQN  300
GPSMPPVQNF VRAEMLPSGY LIRPCEGGGS IIHIVDHMDL EPWSVPEVLR PLYESSTLLA  360
QKTTMAALRN LRQISQEVSQ PNAAGWGRRP AALRGLSQRL SKGFNEAVNG FTDEGWSILE  420
SDGVDDVTLL VNSSPGKMGA NLYANGVPSM SNAVLCAKAS MLLQNVPPAI LLRFLREHRS  480
EWADRSIDAY SAAAIKPGPC GLLGSRAGSF GDQVILPLAH TIEHEEFMEV IKIENMGHYR  540
EDMIMPAADI FLLQLCSGVD ENSVGTCAEL VFAPIDASFS DDGPILPSGF RIIPLDSRMD  600
APSPNRTLDL ASALEVGPAG SRASGDNAGH SGNTKSVMTI AFQFAFEIHL QDNVASMARQ  660
YVRSIIASVQ RVALALSPSR FGSNSGFRPP PGTPEAQTLA GWICQSYRCY LGGDLLKSEG  720
SESILKSLWH HSDAILCCSL KALPVFTFAN QAGLDMLETT LVALQDITLE KIFDDNGRKT  780
LFSEFPQIMQ QGFMCLQGGI CMSSMGRPIS YERAVAWKVL NEEETAHCIC FMFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein