PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000793.1_g210.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 350aa MW: 38754.9 Da PI: 10.1507

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000793.1_g210.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.7	9.4e-16	48	131	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +W++ v L+ea++ ++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + +++ + s++p Pav_sc0000793.1_g210.1.mk 48 EWSEGAVSSLLEAYETKWVLRNRAKLKGHDWEDVARHVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWP 125 5***********************************854444555566679**************99997......4699 PP trihelix 81 yfdqle 86 ++ +l+ Pav_sc0000793.1_g210.1.mk 126 LYPRLD 131 999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MDNETNQENP SLLPNNYTST TKELESPRSK PQQPLGVGGS SDRLKRDEWS EGAVSSLLEA 60 YETKWVLRNR AKLKGHDWED VARHVSSRAN CTKSPKTQTQ CKNKIESMKK RYRSESATAD 120 GSSWPLYPRL DLLLRGSGPS PTAASAAATV AAAAIPPPPP PPPLPLQLPP PPPQNNHPLM 180 LLETSASLPP QPPPTAPPQP LGTAQNSYGS NGVDHRVAKE DGMGMKLSDH ASDKNPLEID 240 SSTPALYSDK EKLRSKRMKR KIEKKKRRRR EEVEIAESIR WLAEVVVRSE QARMDTMREI 300 ERMRVEAEAK RGEMDLKRTE IIANTQLEIA RLFAAGVGKG VDSSLRIGRS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MDNETNQENP SLLPNNYTST TKELESPRSK PQQPLGVGGS SDRLKRDEWS EGAVSSLLEA  60
YETKWVLRNR AKLKGHDWED VARHVSSRAN CTKSPKTQTQ CKNKIESMKK RYRSESATAD  120
GSSWPLYPRL DLLLRGSGPS PTAASAAATV AAAAIPPPPP PPPLPLQLPP PPPQNNHPLM  180
LLETSASLPP QPPPTAPPQP LGTAQNSYGS NGVDHRVAKE DGMGMKLSDH ASDKNPLEID  240
SSTPALYSDK EKLRSKRMKR KIEKKKRRRR EEVEIAESIR WLAEVVVRSE QARMDTMREI  300
ERMRVEAEAK RGEMDLKRTE IIANTQLEIA RLFAAGVGKG VDSSLRIGRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	269	KKKRRR
2	264	270	KKKRRRR
3	265	270	KKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	6e-97	Trihelix family protein