PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000780.1_g430.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 378aa    MW: 39641.6 Da    PI: 9.4427
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000780.1_g430.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.7e-3984143362
                     zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                e alkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Pav_sc0000780.1_g430.1.mk  84 EPALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 143
                                6789*****************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MVFSSIPAYL DPSNWQQQPN HHHLTGSTSN NSNINNSNNN SHLLPPPPPP SNPHGGGSGP  60
GGVGSIRPGS MADRARMANI PLPEPALKCP RCDSTNTKFC YFNNYSLSQP RHFCKTCRRY  120
WTRGGALRNV PVGGGCRRNK RSKGSSSSAS KSPVSSSDRP TGSPGSSGQA NIGLNNTAST  180
ADNNTMMSPQ IPPLRFMSPF ATDMALNYGM NVNNYGGGGG VGDLTSFHQM GSGLGSIGGS  240
LFNFQQQTPS FPFLTAGGGL DPSPAGAGMM FESSGVEVTG YNQVRHRAPS GHGVAGMNSQ  300
MAAVKMELES QQHHQNQNQS QNPELNLSRQ LMGMSSGNDQ YWGNGGGGGG GTSNTAWTDL  360
SGFSSTTSTP SNNINNPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.16e-42Dof family protein