PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000780.1_g420.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 284aa    MW: 31973 Da    PI: 7.0207
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000780.1_g420.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP57.62.1e-1850130371
                    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwk 70 
                                + +Lr+++     ++   e+ g++t+ e a+ ++se               + kn+ RR+YD+lNVLeal++i++  k+ei+w+
  Pav_sc0000780.1_g420.1.mk  50 GGGLRQFSAI---VCDLLESkGRTTYAELADYIMSElagndsekatslsefNDKNIPRRVYDALNVLEALDIITR-VKKEIKWN 129
                                679*******...77776666******************************999*********************.9******9 PP

                    E2F_TDP  71 g 71 
                                g
  Pav_sc0000780.1_g420.1.mk 130 G 130
                                8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MDDNYSGDSF GGFFQNGSAR RSITFDHDNT STADVEINAP KKKRVSRTTG GGLRQFSAIV  60
CDLLESKGRT TYAELADYIM SELAGNDSEK ATSLSEFNDK NIPRRVYDAL NVLEALDIIT  120
RVKKEIKWNG IPDRKMDLEG MKAECVKMMN RIGRKTAYLK DLEEQFADLQ NLMYCNKELL  180
KSGNSRPGGF SLPFILVQTS RDATVEIEIS EDKHMVHFDF NSAPFFLHDD TYILKLLRRH  240
QPPERTNLSQ NSSPSPCPSI VSGGARPFYW SSGTETPNSK LNKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.13e-72E2F/DP family protein