PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000759.1_g380.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 837aa    MW: 91786.4 Da    PI: 6.4672
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000759.1_g380.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181674357
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pav_sc0000759.1_g380.1.mk 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                               5679*****************************************************97 PP
2START168.44.9e-531603682205
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+
  Pav_sc0000759.1_g380.1.mk 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDLPSWLRDCRAVDVLNVL 242
                                7899******************************************************.************************* PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163
                                 ++  g+++l +++l+a+++l+p  df+ +Ry+  l++g++vi+ +S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s 
  Pav_sc0000759.1_g380.1.mk 243 PTAngGTIELLYMQLYAPTTLAPaCDFWLLRYTSVLEDGSLVICVRSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSI 326
                                *9999*************************************************9998899*********************** PP

                                EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                      START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                +++v+h+dl+  +++++lr+l++s+++ ++k+++a+l+++++
  Pav_sc0000759.1_g380.1.mk 327 IHIVDHMDLEPCSVPEVLRPLYESSAVLAQKMTMAALRQLRQ 368
                                **************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    
MAMSCKDGKG GLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSHLV YENGYFRQHT  120
QGTTLATKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIVAISHG CTGVAARACG LVGLEPTRVA EILKDLPSWL RDCRAVDVLN  240
VLPTANGGTI ELLYMQLYAP TTLAPACDFW LLRYTSVLED GSLVICVRSL KNTQNGPTMP  300
PVQHFVRAEM LPSGYLIRPC EGGGSIIHIV DHMDLEPCSV PEVLRPLYES SAVLAQKMTM  360
AALRQLRQIA HEVSQSNVTG WGRRPAALRA LSQRLSRGFN EALNGFTDEG WSMMGNDGMD  420
DVTILINSSP DKLMGLNLSF ASGFPAVSNS VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNIDAYSAA AVKVGPCSLA GSRVGSFGGQ VILPLAHTIE HEEFLEVIKL EGVGHSPEDA  540
MMPREMFLLQ LCSGMDENAV GSCAELIFAP IDASFADDAP LLPSGFRIIP LDYGKEASSP  600
NRTLDLASAL EIGPTGNKAS SEFSANTGCV RSVMTIAFEF ACESHMQEHV ASMARQYVRS  660
IISSVQRVAL ALSPSHLSSH AGLRSPLGTP EAQTLARWIC NSYRCYLGVE LLKSSNEGGE  720
SILKSLWHHS DAIMCCSLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI FDDHGRKTLC  780
SEFPQIMQQG FACLQGGICL SSMGRPVSYE RAVAWKVLNE EETAHCMCFL FVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein