PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000755.1_g360.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 274aa MW: 28267.1 Da PI: 7.4659

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000755.1_g360.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.9	1.3e-11	51	73	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG+C yG+rC+++H++ Pav_sc0000755.1_g360.1.mk 51 DCSYYLRTGICGYGSRCRYNHPR 73 7********************96 PP
2	zf-CCCH	34.5	3.3e-11	146	169	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G+ CkF H++ Pav_sc0000755.1_g360.1.mk 146 PLCTHYAQRGVCKFGPACKFDHPM 169 89********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MERYGRTTEG SQSDPSPEWT VPGPETGLEE SMWQLGLGPG ESYPERTNVT DCSYYLRTGI 60 CGYGSRCRYN HPRDRSAVTG AARPGGLEYP ERAGQPVCQP PASPLPSPST QPGVGSGTLY 120 GMSQLSPSAA AYTGILLRFR HPHGAPLCTH YAQRGVCKFG PACKFDHPMG TLSYSPSASS 180 LADMPVAPYP VGSSIGTLAP SSSSSSTELR PELNSGSGKD LVSARMSSSL STSSGSVGST 240 VSKGGIAHLG VQQSAQGSGP STSSGSSTES HSPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	2e-39	C3H family protein