PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000736.1_g140.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 333aa    MW: 36759.3 Da    PI: 7.1099
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000736.1_g140.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.8e-093566132
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                               rg W++eEde+l++ ++  G g+W++++++ g
  Pav_sc0000736.1_g140.1.mk 35 RGLWSPEEDEKLIKHITTRGHGSWSSVPKHAG 66
                               788***************************98 PP
2Myb_DNA-binding25.72.7e-08801012446
                                HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  24 WktIartmgkgRtlkqcksrwqk 46 
                                W+ Ia++++ gRt++++k++w++
  Pav_sc0000736.1_g140.1.mk  80 WAQIAKHLP-GRTDNEVKNFWNS 101
                                *********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
AVYIIYKSGA ENSRGRVGCR GKMGHRCCGK QKVKRGLWSP EEDEKLIKHI TTRGHGSWSS  60
VPKHAGIQDL LIICLCCIKW AQIAKHLPGR TDNEVKNFWN SCIKKKLISQ GLDPKTHNLI  120
SSHQRASNKI GGSSRSQPHD QQKPISVNFT TVNSQMKNCS AELNSSSSSP IVTLYNAQQP  180
PMVETMATPP THQYHDDQNP NAAWTSVKDP TFHEPSTEST VNISSSSSSS SMNLSVFGLL  240
GNSTCLYAAG AQPFEAPRII LEGEQSKGSE EVLQQEKEKL LEMEMIKAID DQDMDASLME  300
SSSFDFSFLE STLMSTGVTS HDLNSMADFA WNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-48MYB family protein