PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pav_sc0000704.1_g1020.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21226.9 Da PI: 8.2211 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 220.6 | 4.6e-68 | 6 | 161 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnv 86 + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++++++ + +n++ Pav_sc0000704.1_g1020.1.mk 6 DVATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAQNNNYNAQNYRIES 80 5689********************************************99999998885........4555555555555544 PP YABBY 87 ekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++++ ++++++ + + ++v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfg Pav_sc0000704.1_g1020.1.mk 81 GSSSKCNKKIAT---RDPTADHVTQERGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFG 160 444444444444...5566677777788******************************************************9 PP YABBY 170 l 170 l Pav_sc0000704.1_g1020.1.mk 161 L 161 7 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence |
MTSCIDVATE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQAQNNN YNAQNYRIES GSSSKCNKKI ATRDPTADHV TQERGVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNQAK VDNDSEKHLM 180 SRAALLNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.1 | 9e-88 | YABBY family protein |