PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000700.1_g1760.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 585aa    MW: 66547.7 Da    PI: 6.4301
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000700.1_g1760.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.81.8e-1558117266
                    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                                 W+++e laL+++r+ m++++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+ 
  Pav_sc0000700.1_g1760.1.mk  58 WSNDELLALLRIRSTMDNWFPEF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESRYFNNINF 117
                                 ********************998.....9*******************************99875 PP
2trihelix97.89.6e-31413502186
                    trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                                 rW+++evlaLi++r ++ ++ ++++      k+plWe++s+ m e+g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+t
  Pav_sc0000700.1_g1760.1.mk 413 RWPRDEVLALINLRCSLFNNGSADQdkdgvVKAPLWERISQGMLEKGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRT 494
                                 8********************9876566669********************************************8.9999** PP

                    trihelix  79 cpyfdqle 86 
                                 cpyf+ql 
  Pav_sc0000700.1_g1760.1.mk 495 CPYFHQLS 502
                                 ******95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    
PHQHQLLNNS GVQLHRQSAT PKNHEETKES NLVSINNNLE IERERSSSIS QVPISDPWSN  60
DELLALLRIR STMDNWFPEF TWEHVSRKLA ELGFKRSAEK CKEKFEEESR YFNNINFTKN  120
YRFLSDLEEL CHGGDDQNPD QAAAGAENKN QQKVEKPSNN EGDEDNRCQI LDEDSTRNET  180
VVGSKEFDDQ DKEKEVVERT KCNVVRKRKR QRRFEMLKGF CEDIVNRMMA QQEEMHSKLL  240
EDMVKRSEEK LAREEAWKKQ EMDRMNKELE IMAHEQAISG DRQATIIKFL KKFVSSSSSS  300
TSSEPSSDHD HHTNSSSLIN QAQNPNHPTC RQEKEPASST IIQKSGTSSH TPNNPSTPTS  360
LTETLAPQSP SSSTLAPTPT IPKVPIPPEN PSSDHLNTQN PTSNDDKQDL GKRWPRDEVL  420
ALINLRCSLF NNGSADQDKD GVVKAPLWER ISQGMLEKGY KRSAKRCKEK WENINKYFRK  480
TKDVNKKRSL DSRTCPYFHQ LSTLYNQGIL VPPSDHIQGP DHQTRSASPE KKSLASPVVP  540
QTGLDSSDQG RSSADDDLSK HNIIAEGEKN NMVQPVPAAA FDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212KRKRQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.16e-50Trihelix family protein