PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000689.1_g110.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 592aa MW: 64027.7 Da PI: 8.8554

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000689.1_g110.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Pav_sc0000689.1_g110.1.mk 96 FICEICNKGFQRDQNLQLHRRGH 118 89*******************88 PP
2	zf-C2H2	12.5	0.00045	172	194	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pav_sc0000689.1_g110.1.mk 172 WKCDKCSKRYAVQSDWKAHSKTC 194 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MMKGLMFQQQ QQQQQQHSQL VDENMSNLTS ASGEAASVSS GNRNEIGTSF SQQFFAPPPS 60 QTQPALKKKR NLPGNPDPEA EVITLSPKTL MATNRFICEI CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRTSK EVRKKVYVCP EASCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR 180 YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITTGNNNPLL 240 ISPQQQQLQQ PGSSSASHHH HMNLNQVQLA HQFQDLHGFS LKKEQQSFTS LRPDLPPWLA 300 CPGPPNNTSI DLSSSSSIFS TRLDQNFTQT HQDLSLHDHN STAPNPNPNP NPSLGPTLPP 360 FQPAPSPHMS ATALLQKAAQ MGATMSSKNS TASAAAATSA GSSPQPMMRS HQNNQGHVPD 420 FGGHVSSFGN NTAAAATTGA GGASASSNGT GPPPSSSGIH QHHHHQNQNQ NQNQNQHQAS 480 LLHDMMNSLS SGTGFEGASF ELDAFGSMPT VLNNSKKDTN NSNNPSSAHF NRSSASDEGG 540 GHGEGLTRDF LGLRALSHSD FLNIAGLGSC VTSAATAAAS SSLDQTHKPW QG

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MMKGLMFQQQ QQQQQQHSQL VDENMSNLTS ASGEAASVSS GNRNEIGTSF SQQFFAPPPS  60
QTQPALKKKR NLPGNPDPEA EVITLSPKTL MATNRFICEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRTSK EVRKKVYVCP EASCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR  180
YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITTGNNNPLL  240
ISPQQQQLQQ PGSSSASHHH HMNLNQVQLA HQFQDLHGFS LKKEQQSFTS LRPDLPPWLA  300
CPGPPNNTSI DLSSSSSIFS TRLDQNFTQT HQDLSLHDHN STAPNPNPNP NPSLGPTLPP  360
FQPAPSPHMS ATALLQKAAQ MGATMSSKNS TASAAAATSA GSSPQPMMRS HQNNQGHVPD  420
FGGHVSSFGN NTAAAATTGA GGASASSNGT GPPPSSSGIH QHHHHQNQNQ NQNQNQHQAS  480
LLHDMMNSLS SGTGFEGASF ELDAFGSMPT VLNNSKKDTN NSNNPSSAHF NRSSASDEGG  540
GHGEGLTRDF LGLRALSHSD FLNIAGLGSC VTSAATAAAS SSLDQTHKPW QG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	135	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-113	C2H2 family protein