PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000683.1_g180.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 160aa    MW: 18242.8 Da    PI: 4.0158
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000683.1_g180.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.9e-091445132
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                               +g+W +eEde+l  +v++ G+++W++ a++ g
  Pav_sc0000683.1_g180.1.mk 14 KGPWLEEEDEQLTAYVNLKGNRRWDALAKESG 45
                               79***************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MTCQADIEGE KLRKGPWLEE EDEQLTAYVN LKGNRRWDAL AKESGNFQCT SNKGQQSLFF  60
QEGDMSAEKQ YNFNQDHDSV SNLCGAKDPC SDDLGLSEFA LTNSPYETRL SDWISELSSE  120
QSGINYNQDC NSVESDLCHL TWTPDDSNRR ECPSFLWDMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.17e-10MYB family protein