PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000675.1_g920.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 603aa MW: 67485 Da PI: 9.5824

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000675.1_g920.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.5	1.8e-19	51	97	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l++av+++ g++Wk+Ia++++ Rt+ qc +rwqk+l Pav_sc0000675.1_g920.1.mk 51 KGGWTEEEDKILAHAVQKFNGRNWKKIAECVP-DRTDVQCLHRWQKVL 97 688***************************.**********986 PP
2	Myb_DNA-binding	56.6	5.9e-18	103	149	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd+l++++v++ G++ W+ Ia+ ++ gR +kqc++rw+++l Pav_sc0000675.1_g920.1.mk 103 KGFWSKEEDDLIIELVAKQGNKKWSEIAKSLP-GRIGKQCRERWHNHL 149 688***************************.***********97 PP
3	Myb_DNA-binding	55	1.9e-17	155	197	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+eE++ l++a+k +G++ W+ Ia+ ++ gR+++++k++w+ Pav_sc0000675.1_g920.1.mk 155 RTAWTKEEELTLIEAHKIYGNK-WAEIAKFLN-GRSENSIKNHWN 197 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MVQVKEFDGN LKEEGLVSLS PSVSGSTCDN AVLNLASLQG RMAGPIRRST KGGWTEEEDK 60 ILAHAVQKFN GRNWKKIAEC VPDRTDVQCL HRWQKVLNPD LVKGFWSKEE DDLIIELVAK 120 QGNKKWSEIA KSLPGRIGKQ CRERWHNHLN PDIKRTAWTK EEELTLIEAH KIYGNKWAEI 180 AKFLNGRSEN SIKNHWNSSV KKKLELRSSH TSDMGSQNIK SESRKREVVK QGLDQKANME 240 RNVEPCSLDL NLVLGTANRR ESQMQSSDKG SCGWLTKRAA TNKMMKTPPR TVFYDRAAAA 300 CGLNIEQCQE TSSNCGRLRD SHNLTANNHY NNICNTAPDY LGFPFSHRRN HKPSDPIYLL 360 PSRPLPRPPQ ASLNAGLGVP GCKKTAGYFI NKPVLPVTAQ GLYESSSGPQ AYEKKKDGGA 420 PVNSKNSSHG RLCYRPFQLE DVEFYLENGE FPSTDSYIQT ECSSVSFCTP TSHDTRIFVD 480 CNSPDSTLRS AARTFEKSPS IIRKRRHSVS RKSVNAVNHG DSVCSKEISN NFRNSPHLLG 540 LSPCGKTNSS SMVHSNLKQH FISPPQSQKF GDSAVMKSVE KRLEHAFDVE WDSASTVSRT 600 LSP

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MVQVKEFDGN LKEEGLVSLS PSVSGSTCDN AVLNLASLQG RMAGPIRRST KGGWTEEEDK  60
ILAHAVQKFN GRNWKKIAEC VPDRTDVQCL HRWQKVLNPD LVKGFWSKEE DDLIIELVAK  120
QGNKKWSEIA KSLPGRIGKQ CRERWHNHLN PDIKRTAWTK EEELTLIEAH KIYGNKWAEI  180
AKFLNGRSEN SIKNHWNSSV KKKLELRSSH TSDMGSQNIK SESRKREVVK QGLDQKANME  240
RNVEPCSLDL NLVLGTANRR ESQMQSSDKG SCGWLTKRAA TNKMMKTPPR TVFYDRAAAA  300
CGLNIEQCQE TSSNCGRLRD SHNLTANNHY NNICNTAPDY LGFPFSHRRN HKPSDPIYLL  360
PSRPLPRPPQ ASLNAGLGVP GCKKTAGYFI NKPVLPVTAQ GLYESSSGPQ AYEKKKDGGA  420
PVNSKNSSHG RLCYRPFQLE DVEFYLENGE FPSTDSYIQT ECSSVSFCTP TSHDTRIFVD  480
CNSPDSTLRS AARTFEKSPS IIRKRRHSVS RKSVNAVNHG DSVCSKEISN NFRNSPHLLG  540
LSPCGKTNSS SMVHSNLKQH FISPPQSQKF GDSAVMKSVE KRLEHAFDVE WDSASTVSRT  600
LSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	3e-87	MYB family protein