PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000675.1_g100.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 124aa MW: 13894.2 Da PI: 4.6368 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 43.1 | 1.2e-13 | 2 | 42 | 60 | 100 |
DUF260 60 slvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 s+ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la lk++ Pav_sc0000675.1_g100.1.br 2 SISYEAQARIQDPIYGCVSHIFALQQQVVNLQAQLAFLKDQ 42 9***********************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence |
MSISYEAQAR IQDPIYGCVS HIFALQQQVV NLQAQLAFLK DQAAQSFVNG SNPNQAAQSW 60 NYENGIMNSN NSVNGSYENL VNIPEEGTSH SMSSFGMQTN YNRQWGFQDA DELQSVVSSY 120 IHHR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-11 | LBD family protein |